Gene detail

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Species

Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Soca5g05365	ATGGCATTCTCATGTACTATTCTTAGACCAACTAATCCACCATTAACTGCTGTTGATTCCATAATATCAACCACCTCTTTATTTGCTACTACTACTACCACTAGACCATCATCATCTTCTTTAAAGATTCATTCCACCACCACCACCACCACCTTGTTTGGCGGTTCTCCGGTTTCTTGGGAATCTTGTTCTTCTTCTTTAAGGGTGGTTAATGATAGACGGATTAATCCGATTAAAGCAACTGCTACCCAGACACCACCAATTGTTTCAAAGTCCGGTGGCAGTGTGAAGACCAAGATTGGAATCAATGAGCATCATTGTATTACTTTGAATGTTGCAGGTTTTGGAAGAATTGGAAGGTTGGTGCTGAGAATAGCATCATTTCGAGATGATATCGAGGTTGTTGCTGTCAACGATCCTTTTATTAATTCAGAGTACATGGCTTACATGTTGAAGTATGATTCTACTCATGGTGCATTTAAAGGAACCATCAATGTTGTTGATGAGTCCACTTTGGAAATCAATGGAAAGCATATAAAAGTGACTAGCCAAAGAGACCCTGCAACAATTCCTTGGGGTGATTTTGGAGCTGACTACGTTGTTGAATCTTCTGGGGTTTTTACAACACTTGATACAGCTTCAGCACATAAGAAGGGTGGCGCCAAAAAGGTGGTGATTTCCGCTCCGTCAGCTGATGCACCTATGTTTGTTGTAGGGGTAAATGAGACCACATACAAGCCATACATGGATATTGTATCCAACGCAAGCTGCACCACTAATTGCTTGGCTCCTTTGGCCAAGGTGGTTCATGAGGAGTTTGGTATTGTCGAAGGTTTGATGACAACTGTGCATGCAACAACAGCTACACAAAAAACTGTTGATGGACCTTCAATGAAGGATTGGCGTGGAGGTCGTGGTGCGGCCCAAAACATCATCCCCAGTTCAACTGGCGCTGCCAAGGCTGTAGGGAAGGTGTTACCAGAACTAAACGGAAAACTCACGGGTATGGCCTTTAGGGTCCCAACAGCAAATGTTTCTGTTGTAGATCTTACTTGTCGACTTGAGAAAAGTGCTTCATATGAAGATGTTAAAGCTTCTATAAAATATGCTTCTGAGGGTCCCATGAAAGGAATTCTCGGGTACACTGATGAGGATGTTGTCTCAAATGATTTTGTTGGTGATCCCAGGTCAAGTATTTTTGATGCGAAAGCCGGAATTGGGCTAAGTGCATCATTTGTGAAGCTGGTATCGTGGTACGACAACGAGTGGGGTTACAGCAATCGAGTGTTGGACCTCATAGAGCATATGGCGTTGGTGGCAGCTGCCAACTAA	1332	43.24	MAFSCTILRPTNPPLTAVDSIISTTSLFATTTTTRPSSSSLKIHSTTTTTTLFGGSPVSWESCSSSLRVVNDRRINPIKATATQTPPIVSKSGGSVKTKIGINEHHCITLNVAGFGRIGRLVLRIASFRDDIEVVAVNDPFINSEYMAYMLKYDSTHGAFKGTINVVDESTLEINGKHIKVTSQRDPATIPWGDFGADYVVESSGVFTTLDTASAHKKGGAKKVVISAPSADAPMFVVGVNETTYKPYMDIVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTANVSVVDLTCRLEKSASYEDVKASIKYASEGPMKGILGYTDEDVVSNDFVGDPRSSIFDAKAGIGLSASFVKLVSWYDNEWGYSNRVLDLIEHMALVAAAN	443

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Soca5g05365	443	FunFam	Glyceraldehyde-3-phosphate dehydrogenase	108	267	-	-
	Soca5g05365	443	ProSitePatterns	Glyceraldehyde 3-phosphate dehydrogenase active site.	255	262	IPR020830	GO:0016620(InterPro)
	Soca5g05365	443	SMART	gp-dh-n-7	110	257	IPR020828	GO:0051287(InterPro)
	Soca5g05365	443	PANTHER	GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE	95	437	IPR020831	GO:0016620(InterPro)
	Soca5g05365	443	Gene3D	-	111	435	-	-
	Soca5g05365	443	Gene3D	Dihydrodipicolinate Reductase; domain 2	256	421	-	-
	Soca5g05365	443	Pfam	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain	110	209	IPR020828	GO:0051287(InterPro)
	Soca5g05365	443	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	335	352	IPR020831	GO:0016620(InterPro)
	Soca5g05365	443	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	278	294	IPR020831	GO:0016620(InterPro)
	Soca5g05365	443	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	251	269	IPR020831	GO:0016620(InterPro)
	Soca5g05365	443	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	375	390	IPR020831	GO:0016620(InterPro)
	Soca5g05365	443	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	216	229	IPR020831	GO:0016620(InterPro)
	Soca5g05365	443	NCBIfam	glyceraldehyde-3-phosphate dehydrogenase, type I	111	431	IPR006424	GO:0006006(InterPro)\|GO:0016620(InterPro)\|GO:0050661(InterPro)\|GO:0051287(InterPro)
	Soca5g05365	443	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	109	273	IPR036291	-
	Soca5g05365	443	Pfam	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain	262	419	IPR020829	GO:0016620(InterPro)
	Soca5g05365	443	FunFam	Glyceraldehyde-3-phosphate dehydrogenase	256	421	-	-
	Soca5g05365	443	SUPERFAMILY	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	256	419	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Soca5g05365	K00134	glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Soca	Soca-Chr4:76217006	Soca5g05365	Soca-Chr5:73860665	dispersed
	Soca	Soca-Chr5:73860665	Soca7g04485	Soca-Chr7:73027415	dispersed
	Soca	Soca-Chr5:73860665	Soca5g05366	Soca-Chr5:73872565	tandem