Gene detail

Gene Search

Species

Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Soca5g05375	ATGAATATGAATAATAATAATAATAATAATAGTAGTAATCCAGCTACGCCGATGAACGCTAACGCGCCGTCGTCTAGCTCCGGCGGCGCCGGATCACCGGATTCTCGTACCCCGACAAGAAACTCTAAGCGACCTAAGTATTCTAGGTTTACACAGCAGGAACTTCCAGCGTGCAAGCCGATTCTTACACCGAAATGGGTGATTTCAGCATTTATGCTTGTTACAATTGTTTTCATCCCAATAGGACTTGCTTCTCTCTTTGCATCTCGTGATGTAGTTGAAATTATTGATCGATACGATAATGCCTGCATACAAGGCACAAAAAGTGAGAAGGTCCAATTTATACAATCCGATGGAAATAAAACTTGTACCAGAAGCTTGACAGTCCATAAGCGTATGAAGCAGCCTATTTATGTCTATTATCAGCTCGACAATTATTATCAGAATCACCGCAGGTATGTCAAGAGCCGAAGTGATCAGCAATTGAGAAACCGTGGTGATGAGAATGACACGAGTAGCTGTAAGCCGGAAAATGATGCAAATGGGATGCCAATAGTGCCTTGTGGTCTTGTAGCCTGGAGTTTGTTCAATGACACCTATAGCTTCTCAACTGGAAACAACCGCGAGTTACCTGTAAACAAGAGGCATATTTCATGGAAGAGTGACAGAGAAGACAAGTTCGGTAGTGACGTCTTCCCGAAAAATTTCCAAAACGGAAGTCTCATTGGCGGCGGGCGTCTCAATGAGACTGTGCCATTAAGTGAACAGGAAGACCTAATTGTGTGGATGCGAACTGCGGCTCTTCCAACTTTTAGGAAGTTGTACGGGAAGATAGAGGTCGATATTGAGGCCGGTGAGACGATAAATGTGGTGCTGGAGAACAGGTACAACACTTACAGTTTCAGTGGCAAGAAGAAACTTGTGCTATCAACTACCAGCTGGCTTGGTGGAAAGAATAACTTCATAGGCATTGCATATCTTTCTGTTGGGGGCTTGTGCTTCTTGCTTGCCACAACTTTCACTCTCATATATCTAGTTAAACCGAGGCATCTTGGAGATCCTACTTATTTGTCATGGAACCGAAACCCAGGTGGTCACTGA	1101	43.87	MNMNNNNNNNSSNPATPMNANAPSSSSGGAGSPDSRTPTRNSKRPKYSRFTQQELPACKPILTPKWVISAFMLVTIVFIPIGLASLFASRDVVEIIDRYDNACIQGTKSEKVQFIQSDGNKTCTRSLTVHKRMKQPIYVYYQLDNYYQNHRRYVKSRSDQQLRNRGDENDTSSCKPENDANGMPIVPCGLVAWSLFNDTYSFSTGNNRELPVNKRHISWKSDREDKFGSDVFPKNFQNGSLIGGGRLNETVPLSEQEDLIVWMRTAALPTFRKLYGKIEVDIEAGETINVVLENRYNTYSFSGKKKLVLSTTSWLGGKNNFIGIAYLSVGGLCFLLATTFTLIYLVKPRHLGDPTYLSWNRNPGGH	366

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Soca5g05375	366	Pfam	LEM3 (ligand-effect modulator 3) family - CDC50 family	86	349	IPR005045	GO:0016020(InterPro)
	Soca5g05375	366	MobiDBLite	consensus disorder prediction	1	49	-	-
	Soca5g05375	366	PANTHER	CELL CYCLE CONTROL PROTEIN 50	39	358	IPR005045	GO:0005783(PANTHER)\|GO:0005794(PANTHER)\|GO:0005886(PANTHER)\|GO:0016020(InterPro)
	Soca5g05375	366	MobiDBLite	consensus disorder prediction	1	50	-	-
	Soca5g05375	366	PIRSF	Lem3-Cdc50	9	362	IPR005045	GO:0016020(InterPro)
	Soca5g05375	366	MobiDBLite	consensus disorder prediction	156	180	-	-
	Soca5g05375	366	MobiDBLite	consensus disorder prediction	156	174	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Soca5g05375	K26935	cell cycle control protein 50

Event-related genes

Select	Gene_1	Gene_2	Event_name
	155657	Soca2g04679	Soca5g05375

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Soca	Soca-Chr4:9695791	Soca5g05375	Soca-Chr5:73970752	transposed
	Soca	Soca-Chr4:81431124	Soca5g05375	Soca-Chr5:73970752	transposed
	Soca	Soca-Chr5:13138981	Soca5g05375	Soca-Chr5:73970752	transposed
	Soca	Soca-Chr2:91512270	Soca5g05375	Soca-Chr5:73970752	wgd