Gene detail

AGRP Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Soca5g05410	ATGGCTAAAAGCTCCTTCAAATTGGAACACCCTTTAGAGAGGCGACAAGCTGAGGCTGCACGTATCAGGGAGAAGTACCCTGACAGAATTCCGGTTATTGTTGAGAAAGCTGAAAGAACTGACATTCCTGATATTGACAAGAAAAAATATCTGGTACCTGCTGATCTTACTGTTGGACAGTTTGTGTATGTGGTAAGAAAGAGGATTAAGCTGAGTGCTGAAAAGGCCATCTTTATCTTTGTGAAAAACATTCTGCCACCCACTGCCGCCATGATGTCTGCAATATATGAAGAAAACAAAGATGAGGATGGCTTCCTTTACATGACTTACAGCGGGGAGAATACGTTTGGATCACTTTGA	360	42.22	MAKSSFKLEHPLERRQAEAARIREKYPDRIPVIVEKAERTDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGSL	119

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Soca5g05410	119	Gene3D	-	1	117	-	-
	Soca5g05410	119	SUPERFAMILY	Ubiquitin-like	3	117	IPR029071	-
	Soca5g05410	119	PANTHER	MICROTUBULE-ASSOCIATED PROTEINS 1A-1B LIGHT CHAIN 3-RELATED	3	117	IPR004241	GO:0006995(PANTHER)
	Soca5g05410	119	FunFam	Autophagy-related protein	1	117	-	-
	Soca5g05410	119	Pfam	Autophagy protein Atg8 ubiquitin like	14	117	IPR004241	-
	Soca5g05410	119	CDD	Ubl-ATG8	12	114	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Soca5g05410	K08341	GABA(A) receptor-associated protein

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Soca	Soca-Chr5:74838795	Soca9g03022	Soca-Chr9:35137286	dispersed
	Soca	Soca-Chr5:19267559	Soca5g05410	Soca-Chr5:74838795	transposed
	Soca	Soca-Chr6:4337556	Soca5g05410	Soca-Chr5:74838795	transposed
	Soca	Soca-Chr4:62211420	Soca5g05410	Soca-Chr5:74838795	wgd