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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g05416 ATGGATAAAAACAAGGGTTTGGAATCCATACAAACATCAATTCAAAATATCAATTTAAATAATAATAATAATTCCAACAAAATTTCCAAGAATTATAATAATAACCCGTCTCTTCAATCATCTTGGTCACCTTTAGTGAAGAGAAAAGCTCCTGCTTTGGTGAGCTTATGTCTTGGAATTCTAGGCAAACATCTTGAAGATATTATTGAGGATTTAGAGCTTTTAACCAGCTTCCCACCCGACATTAAGATGGCCATAACAGCCATTGCAAGAAGAAGAAAGTTGCTAAATGATGACGTGATCGTTGCATTGGCAGAGAGCTCATGGGAAGTTCTTGATTTATCAGATTCAGATGTCTCTGATGTTGGTTTGTCGAAGGTGATAGAGACTTGCAGTCATGTGAGGGCCATGGACATAAGTCGTTGCAGCAAAATCACTTCATTTGGTGTTTCAGAACTTGTGAAGGGGTGCCATTGTCTTGAGATACTGCGATGGGGTTAA 501 38.12 MDKNKGLESIQTSIQNINLNNNNNSNKISKNYNNNPSLQSSWSPLVKRKAPALVSLCLGILGKHLEDIIEDLELLTSFPPDIKMAITAIARRRKLLNDDVIVALAESSWEVLDLSDSDVSDVGLSKVIETCSHVRAMDISRCSKITSFGVSELVKGCHCLEILRWG 166
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g05416 166 Gene3D Ribonuclease Inhibitor 85 165 IPR032675 -
Soca5g05416 166 SUPERFAMILY RNI-like 12 163 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g05416 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr5:74876409 Soca5g05418 Soca-Chr5:74876409 dispersed
Soca Soca-Chr5:74876409 Soca5g05416 Soca-Chr5:74876409 tandem
Soca Soca-Chr5:74876409 Soca5g05417 Soca-Chr5:74876409 tandem