AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g05444 ATGATGGATGGAATTGAAGCACCTTCATTCTCTTTAGGTCTTGATTTTGATGACCCCCAAACTCAAACTCCTCTCCATTCGGATCCTCCTCAATATCCCAAACTTAACCGCCTCCCACGTTGCACAGATGAACATCTTCATATTCAGGACACTGCTGTCTGTACCGGTTCAAAGTTGCCACCAAATAAAATAGAAAATAGAAACCAAAATGTATCATATGCCGGGGAGCCAGTCTCGACAAGCTGCAGTAGTCCGGTGTTTTCCAAGTTCACTGTCACTCCTATTGGAAGGTTTCAGTTGATTGATTCTGACTTGGATTCTGATTTGGATTCTGATCATCCTTGTGTTAGTGACAGCGATAATGATAAGAAATGTGATCGGCCAGTGAAAAGAAGGCAGTGGAATGTAGATGAATCAAGCAACTTGTTAGAGAAGAGAGTTTGTGTCCCAACACCTGCCATGGATGAATTTTGTCAAGAATTTTTCGGACCCATAAAACATGAAAGGAATGCTGTTGTACAAACTAACCAAAGAAACCCTGTCACAAGAAGTTCCGTAAATGTGGATGACTCTTATCTCCCTGCTCATCGTTATTATTTTCATGATGATCCAAGGATCCAAGAGCTTGTTCGAAGTCGCCTGCATAATTTTTCCCCTTTGGGCAACCCATTAAACAGAGATCTTGACCAGCCCAGTGCATCAAATATTGATTACATGTAA 720 41.53 MMDGIEAPSFSLGLDFDDPQTQTPLHSDPPQYPKLNRLPRCTDEHLHIQDTAVCTGSKLPPNKIENRNQNVSYAGEPVSTSCSSPVFSKFTVTPIGRFQLIDSDLDSDLDSDHPCVSDSDNDKKCDRPVKRRQWNVDESSNLLEKRVCVPTPAMDEFCQEFFGPIKHERNAVVQTNQRNPVTRSSVNVDDSYLPAHRYYFHDDPRIQELVRSRLHNFSPLGNPLNRDLDQPSASNIDYM 239
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g05444 239 MobiDBLite consensus disorder prediction 223 239 - -
Soca5g05444 239 MobiDBLite consensus disorder prediction 1 33 - -
Soca5g05444 239 PANTHER RHO GTPASE-ACTIVATING PROTEIN 2 31 - -
Soca5g05444 239 MobiDBLite consensus disorder prediction 220 239 - -
Soca5g05444 239 MobiDBLite consensus disorder prediction 15 29 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g05444 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
155606 Soca2g04458 Soca5g05444
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
5155343 Soca Soca5g05443 Soca-Chr5:75076832 Soca5g05444 Soca-Chr5:75076832