AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g05445 ATGGGTGATACCGGACCTTGTGGACCCTGTACTGAAATACATTTTGATAGAATTGGTGGCCGTGAGGCTGCAGAGTTGGTAAACAATGATGACCCTACGTTGATCGAAATATGGAATAACGTGTTTATTCAGTTTAACAGGGAAGCCGATGGCTCCTTAAAACCGCTGCCTGCTCAACATGTGGATACTGGAATGGGTTTTGAAAGATTGACTTCAATCCTTCAGAACAAGATGAGCAACTATGACACTGATGTGTTTATACCTATTTTTGATGCTATCCAACAGGCAACTGGTGCTAGGCCGTATTCAGGCAAAGTGGGGCCAGATGATGCAGATGGAATTGATATGGCTTATAGAGTTGTTGCTGACCATATCAGAACTCTTTCATTTGCCATTGCAGACGGTTCTCGTCCAGGCAATGAAGGGCGTGAGTATGTTCTGCGACGCATTCTTAGGCGAGCCGTACGCTATGGGACAGAAGTATTGAAAGCGCAGCAAGGATTTTTTAATGGATTAGTGAAAGTTGTGGTGGATGTAATGGGCCATGTCTTTCCTGAGCTAAAAGAACAAGAGGAACACATTAGAGAGGTCATAGCGGATGAGGAAGAAAGTTTTGGGAGGACATTACTTCATGGTATTGAGAAGTTTAAGAGGACTGCTCAAGATGTTAAGGGAAAGTCATTTAGTGGACAGGATGCATTTGTGTTGTGGGATACCTTTGGATTTCCACTGGATTTGACTCAGTTGATGGCAGAAGAAAGAGGGCTTGAGGTTGATGTTGAGGGTTTTAATATTGCCATGAATGAAGCTAGAGAAAGATCCAGGAATGCCCAGAATAAGGGTACTGCATTTGCGATTGTCATGGATGCAGATGCTACTTCAGTACTGCATAAGAAAGGGGTTGCTACAACAAATGATAGTTTTAAGTATACATGGTTTGAGGACCACGAAAGTGTGATAAAAGCGATTTACACGGGCCGTGAATATGTTGAACATGTTGATGCTGGCGTTGATGTTGGTATAATACTTGAGAGCACAAGTTTCTATGCCGAGCAAGGTGGTCAGATATTTGATACTGGACTACTTGGAGGCCCTTCTGGACTGTTTGAAGTTAGCAACGTTCAAGTTTATGGTGGTTTTGTGATTCATCTTGGTAAAATTACTGGGTCTGCCAAGTTTCATGTGGGCGATAAAGTTATATGCAAGGTTGATTATGAAAGACGTCAGCGAATTGCTCCTAACCATACCTGTACACACATGCTAAATTTTGCACTCAGGGAAGTACTTGGAACTCATGTTGACCAAAAAGGATCCATTGTTCTTCCAGAAAAACTAAGATATGACTTCTCACATGGGAAGCCTGTACATCCAGAGGACCTTCGCAGAATTGAATCTATTGTGAATGAACAAATTAAAGCTGAATTGGATGTTTCTGCGAAGGAGGCAAGCCTTGCTGATGCAAAGCGAGTAAATGGTTTACGGGCAGTTTTTGGTGAAGTATATCCTGATCCGGTTAGGGTTGTTGCAATTGGTCAACAAGTGGACGATCTCCTTGCCGATCCTGAAAATGAAAAATGGTTATCCATATCTGCAGAGCTCTGTGGAGGGACCCACATTTCAAATACAAGAGAGGCGAAGGCATTTGCACTTTTGTCTGAGGAAGGAATTGCCAAGGGGATTCGAAGAGTCACTGCTGTAACGACAGATCATGCTTTTGAGGCTATTAAAAAGGCTCAGGAACTTGAGCAGGAAATTGACCTGGCATCGAAACTAGAAGGAAGCCTTCTTGATAAGAAAGTGAGCTGGTTAAATGGTCAGGTAAACTCCGCTGCTATTCCAACAGCAAGAAAGGCTGATCTTATGGCAAAAATGGCTATTCTTCAGGACCAATTGAAAGAATCGAAAAAGAAAATTGCTGGGGAGAACATACGTAAAGCTGTTGAAGCTGCCACTGAATCAGCAGAAGCTGCTGCTTCTGAGGGCAAGGCCTTTTGCATTGCACATGTTGGAGTAGGGTCGGATGCAACTGTTATTCGTGAAGCAGTTATTAAAGTCATGGAACAGAGGGGAATGGCAGTGATGGTTTTCAGCACCGATGAACAATCGAAGAAGGCCTTCGTTTGCGCAGGGGTGCCAGTCAACAGCGATCAAAGCAACCACTTGAAGGTTAAAGATTGGCTGGACGCGGCACTCAATCCTCTAAAAGGCAAAGGTGGTGGAGGGAAAGGCGGTCTTGCTCAAGGCCAGGGACCCAACATAGATCATGTAGATGAAGCAATTGACGTTGCTAAATCATTTGCAGCACTGAAACTGGGGTGA 2319 43.77 MGDTGPCGPCTEIHFDRIGGREAAELVNNDDPTLIEIWNNVFIQFNREADGSLKPLPAQHVDTGMGFERLTSILQNKMSNYDTDVFIPIFDAIQQATGARPYSGKVGPDDADGIDMAYRVVADHIRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGTEVLKAQQGFFNGLVKVVVDVMGHVFPELKEQEEHIREVIADEEESFGRTLLHGIEKFKRTAQDVKGKSFSGQDAFVLWDTFGFPLDLTQLMAEERGLEVDVEGFNIAMNEARERSRNAQNKGTAFAIVMDADATSVLHKKGVATTNDSFKYTWFEDHESVIKAIYTGREYVEHVDAGVDVGIILESTSFYAEQGGQIFDTGLLGGPSGLFEVSNVQVYGGFVIHLGKITGSAKFHVGDKVICKVDYERRQRIAPNHTCTHMLNFALREVLGTHVDQKGSIVLPEKLRYDFSHGKPVHPEDLRRIESIVNEQIKAELDVSAKEASLADAKRVNGLRAVFGEVYPDPVRVVAIGQQVDDLLADPENEKWLSISAELCGGTHISNTREAKAFALLSEEGIAKGIRRVTAVTTDHAFEAIKKAQELEQEIDLASKLEGSLLDKKVSWLNGQVNSAAIPTARKADLMAKMAILQDQLKESKKKIAGENIRKAVEAATESAEAAASEGKAFCIAHVGVGSDATVIREAVIKVMEQRGMAVMVFSTDEQSKKAFVCAGVPVNSDQSNHLKVKDWLDAALNPLKGKGGGGKGGLAQGQGPNIDHVDEAIDVAKSFAALKLG 772
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g05445 772 Gene3D - 404 580 - -
Soca5g05445 772 Pfam tRNA synthetases class II (A) 1 407 IPR018164 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Soca5g05445 772 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 1 577 IPR018165 GO:0003676(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Soca5g05445 772 NCBIfam alanine--tRNA ligase 1 750 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Soca5g05445 772 SUPERFAMILY Translation proteins 328 403 IPR009000 -
Soca5g05445 772 Pfam DHHA1 domain 627 766 IPR003156 GO:0003676(InterPro)
Soca5g05445 772 SUPERFAMILY Class II aaRS and biotin synthetases 1 81 IPR045864 -
Soca5g05445 772 PANTHER ALANYL-TRNA SYNTHETASE 1 768 IPR050058 GO:0002161(PANTHER)|GO:0004813(PANTHER)|GO:0005739(PANTHER)|GO:0006419(PANTHER)|GO:0009507(PANTHER)
Soca5g05445 772 SMART tRNA-SAD-4 505 564 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Soca5g05445 772 PRINTS Alanyl-tRNA synthetase signature 35 46 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Soca5g05445 772 PRINTS Alanyl-tRNA synthetase signature 143 156 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Soca5g05445 772 PRINTS Alanyl-tRNA synthetase signature 62 75 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Soca5g05445 772 PRINTS Alanyl-tRNA synthetase signature 119 135 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Soca5g05445 772 Coils Coil 571 591 - -
Soca5g05445 772 FunFam Alanine--tRNA ligase 659 767 - -
Soca5g05445 772 FunFam Alanine--tRNA ligase, cytoplasmic 404 579 - -
Soca5g05445 772 SUPERFAMILY ThrRS-AlaRS common domain 403 576 IPR018163 GO:0000166(InterPro)
Soca5g05445 772 Gene3D Bira Bifunctional Protein; Domain 2 1 78 IPR045864 -
Soca5g05445 772 Coils Coil 260 280 - -
Soca5g05445 772 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 505 563 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Soca5g05445 772 Gene3D - 659 767 - -
Soca5g05445 772 Gene3D - 303 403 - -
Soca5g05445 772 Coils Coil 617 644 - -
Soca5g05445 772 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 82 283 IPR018162 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006419(InterPro)
Soca5g05445 772 Hamap Alanine--tRNA ligase [alaS]. 1 771 IPR023033 GO:0004813(InterPro)
Soca5g05445 772 FunFam Alanine--tRNA ligase 303 402 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g05445 K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
5107725 Soca Soca1g06726 Soca-Chr1:96755595 Soca5g05445 Soca-Chr5:75087474
5113824 Soca Soca2g04876 Soca-Chr2:94233304 Soca5g05445 Soca-Chr5:75087474
5114046 Soca Soca2g05125 Soca-Chr2:96806863 Soca5g05445 Soca-Chr5:75087474
5166745 Soca Soca5g05445 Soca-Chr5:75087474 Soca1g07405 Soca-Chr1:114733139