AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre11g01652 ATGGAAGATGAATATGCAAAACTCATCAGGAGGATGAATCCACCCAGAGTTACAATCGACAACAAGTCTTCCCCGGATGCAACAGTTATCCAGGTTGAAAGTGTTAATAAGCATGGTATTCTACTGGAAGTTGTGCAATTTCTTGCTGATTTAGATCTCGTCATCAAAAAAGCATATATTTCATCAGATGGAGGATGGTTCATGGACGTGTTTAATGTTATATATCATGACGGAAGCAAAATTACAGATGAAAGAGTGGTCAGTTATATAAAAAAGGTGCTTGAAAAGGATGCATTTTATGTACCATCATTAACCGGTTCAGTTGGATTAAAACCGTCTGAAGATTACACAGTTATAGAACTAGTTGGAACCGACAGACCCGGATTATTATCCGAAGTATCCGCGGTTCTAACCGACCTCGGTTGTAACGTGGTCAATGCTGAAATATGGACCCACAATGCTCGAGCTGCAGCCGTGGTTCATGTAACCGACGATAAAACTAAATGTGCGGTTAAAGACCCGAAACGTCTTTTAACTATTAAGAAACTTCTTTGTAACATTCTCAAAGGAAACAATGATTTAAAGACTGCAAAAATGACACTTTCGACCCCGGGTTTCATGCACCGACAGAGAAGATTGCATCAAATTATGTTTGCTGAGCGGGATTACGAAAACGTTGAAAAAAATGATGAAAAGGAAAATAAGTTAAGAACGCGCGTTACGGTTTTAGATTGTGTTGAGAAGGATTATACGGTTGTTACAATGCATTGTAGAGATAGACCAAAGTTGTTGTTTGATACTATTTGCACTCTAACTGACATGCAATATGTTGTATTTCATGGAGTTGTTCATACAGGGAAAATGGAGGCTTTTCAGGAATATTACATTCGACATGTCGACGGGAGTCCGGTAAGCTCGGAAGCAGAGCGAGAGCGCGTGATGCAATGCCTTGAAGCCGCGATTGAGCGCAGGACGTCCGAGGCGTTAGAGCTAGAATTATGCACAGCAGATCGCGTTGGACTTCTTTCGGATATAACTCGAATCTTTCGAGAAAACAGTTTGTGTATAAAAAGAGCAGAGATCTCAACTGAAGGTGGAACAGCTAAAGACAAATTTTACGTGACCGACATGACGGCTAACAACCCCGTTGACCCAAAAACCATAGATTCTATTCGAAGACAAATCGGTCAACAAGCATCACTTCATGTTAGATGGAATTCTAGTCAATCATCAGACCCGCAACCTGAAGAAACAACAATCGGCTTTCTGTTTGGAAATCTTTTTAAATGCCGAACATTGAAATCAGTCGGTTCTTAG 1317 40.55 MEDEYAKLIRRMNPPRVTIDNKSSPDATVIQVESVNKHGILLEVVQFLADLDLVIKKAYISSDGGWFMDVFNVIYHDGSKITDERVVSYIKKVLEKDAFYVPSLTGSVGLKPSEDYTVIELVGTDRPGLLSEVSAVLTDLGCNVVNAEIWTHNARAAAVVHVTDDKTKCAVKDPKRLLTIKKLLCNILKGNNDLKTAKMTLSTPGFMHRQRRLHQIMFAERDYENVEKNDEKENKLRTRVTVLDCVEKDYTVVTMHCRDRPKLLFDTICTLTDMQYVVFHGVVHTGKMEAFQEYYIRHVDGSPVSSEAERERVMQCLEAAIERRTSEALELELCTADRVGLLSDITRIFRENSLCIKRAEISTEGGTAKDKFYVTDMTANNPVDPKTIDSIRRQIGQQASLHVRWNSSQSSDPQPEETTIGFLFGNLFKCRTLKSVGS 438
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre11g01652 438 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 7 406 IPR040217 -
Stre11g01652 438 Pfam ACT domain 117 166 IPR002912 -
Stre11g01652 438 CDD ACT-ACR-2 117 190 - -
Stre11g01652 438 SUPERFAMILY ACT-like 24 95 IPR045865 -
Stre11g01652 438 ProSiteProfiles ACT domain profile. 118 199 IPR002912 -
Stre11g01652 438 Gene3D - 113 182 - -
Stre11g01652 438 ProSiteProfiles ACT domain profile. 330 406 IPR002912 -
Stre11g01652 438 ProSiteProfiles ACT domain profile. 29 107 IPR002912 -
Stre11g01652 438 SUPERFAMILY ACT-like 325 399 IPR045865 -
Stre11g01652 438 SUPERFAMILY ACT-like 113 167 IPR045865 -
Stre11g01652 438 CDD ACT-ACR-3 250 324 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre11g01652 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
158452 Stre11g01652 Stre4g01285
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr11:90598239 Stre5g00491 Stre-Chr5:14340790 dispersed
Stre Stre-Chr11:90598239 Stre4g01285 Stre-Chr4:82936355 wgd