AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stre11g01656 | ATGGAGAATCAAGATCCACCACCGTCGGATGTCTCAACCGGAAACGGTGACCGGAACCCAAAAGTCGACAATGAACCCACGTTGGTTGCTTCTCAAGAACATAAAATCTACGAAAATATTGATCGATTCATTAATGTATCAAATAACGATGATCAATCGGACTCATCACCCCCTCTTGAAATCATAGAATCTGTTCAAACTTTTGCTGATATTTTTGATGTTATGATCGTTGAACATGAAACCGGTTCTAAGAAATGGATCCAGCTTGATGAGACTGAATCATCGTTTTTCATCGAATCCGTTGATCGAACAGCCAAGCTTCTCCGATCACTTTCTAAATTCCATTCCGAACAAATTTATGCAGATGCAATTAACCGATTGAGCGGAATTCAGCAACGTGCGATGTGTATATTGGAGGTTGAATTCAAGTCGATCATGGACGATTATCAAACATCTTCCGATCGTGAAAGTAAAACCGATGAAGCCAAAACAAAACAGCTATCGTCTTCTTCTAGCAATGTTCAAGACGCATCGGAGCCAGAACTGCCGGAACAATCGGAATCTTCGCCGGAGAAAGATGAATTCTTAGGATATACAGACGAGATGTTATCCAATTTGAATAAACTCTCCATGGGATTGATCGGTGGTGGTCACGAGATGGAATGCAGTGAATTGTATTTCTTCGTTAGAAGAAACGCGATGGAACAAAACTTGAAGAGTTTTGGGTTCGAGAAATTATCCATCGATGAAATGCAGAAGATGCAGTGGGAACCGATTGAGAAAGAGGTATGTTTATGGAAGAAGATGTTGAAAAATTTCTGCAGCTCGCTTTTGCCGGGTGAACGGAGAGTGGTGGACACCATTTTTTCCGGCCATAAAGCAATCTCCGACCGGCTATTTGGCAACCTCACACGAACAATCCTCTCTTGCTTTTTTGGGTTTGCGGAAGCAGTCATGTTGACGAAAAGATCATCGGAAAAGCTTTTCAAGTTCCTCGACATCTATGAGACGATCAGAGACAGCATCCCGGCGGTAGAGAAACTAATCTCCGATGAATGGTTGTATCCACTCAAATCAGCAGCGTCGTTGATCCGTACAACAATAGGCGAATCCATCTTCACCATTTTTATAGAACTCGAAAACTCCATTAAATCCGATGTAACAAAAACACCGGTTCCCGGAGGAGCAATACACCCATTAAACCGGTACGTCATGAATTACCTAAAATCCGCCTGCGAGTATAACGAAACACTCGAACAAGTATTCCGAGATCTTAAAACCATAGATCAACATCAACCCGATTCAGCCACTCGATCCGATGATGAGGATTCTCAAGAACAAGCACAGAATGTAAACAATAATAATGAATCAGCACACGGATCGCCGTTTCATTCTCAATTGACCAAAATCATGGATCTGTTAAATGCAAATCTAGAAGCGAAATCAAAATTGTACAAAGATCCATCACTAAGTTTGATTTTTTCGATGAACAATGGTCGGTACATTTTGCAGAAGACGAAAGGTACCGGAGAAATGCGGACCTTGTTGGGTGATCCATGGGTGAGAAAACAATCGTCCGATTTACGAAGCTACCATACGACCTATAAACGCGAAACATGGACGAAATTGTTGCAATGTTTGAGTCATGAGGGATTGAGTTCGAAAGGGAAGGTGATGAAACCGGTGTTGAAAGAACGATTCAAGAGCTTTAACGCGATGTTTGATGATATTTATAGAACACAGACGACATGGGTTGTGAGTGATGAGCAGCTCCGGTCGGAATTGCGGGTGTCGGTATCGGCGATTGTTATTCCGGCGTATCGATCGTTTATTGGGAGGTTTAGTCAGGTGTTTACTCCGGGAAGACAAACGGAAAAGTATATCAAGTATCAACCGGAGGATATAGAAACATGTATTGAAGAATTGTTTGATGGGAGTGCAGCTCAACAAAGCAAGAAGAGATGA | 1965 | 42.09 | MENQDPPPSDVSTGNGDRNPKVDNEPTLVASQEHKIYENIDRFINVSNNDDQSDSSPPLEIIESVQTFADIFDVMIVEHETGSKKWIQLDETESSFFIESVDRTAKLLRSLSKFHSEQIYADAINRLSGIQQRAMCILEVEFKSIMDDYQTSSDRESKTDEAKTKQLSSSSSNVQDASEPELPEQSESSPEKDEFLGYTDEMLSNLNKLSMGLIGGGHEMECSELYFFVRRNAMEQNLKSFGFEKLSIDEMQKMQWEPIEKEVCLWKKMLKNFCSSLLPGERRVVDTIFSGHKAISDRLFGNLTRTILSCFFGFAEAVMLTKRSSEKLFKFLDIYETIRDSIPAVEKLISDEWLYPLKSAASLIRTTIGESIFTIFIELENSIKSDVTKTPVPGGAIHPLNRYVMNYLKSACEYNETLEQVFRDLKTIDQHQPDSATRSDDEDSQEQAQNVNNNNESAHGSPFHSQLTKIMDLLNANLEAKSKLYKDPSLSLIFSMNNGRYILQKTKGTGEMRTLLGDPWVRKQSSDLRSYHTTYKRETWTKLLQCLSHEGLSSKGKVMKPVLKERFKSFNAMFDDIYRTQTTWVVSDEQLRSELRVSVSAIVIPAYRSFIGRFSQVFTPGRQTEKYIKYQPEDIETCIEELFDGSAAQQSKKR | 654 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stre11g01656 | 654 | MobiDBLite | consensus disorder prediction | 164 | 184 | - | - | |
| Stre11g01656 | 654 | SUPERFAMILY | Cullin repeat-like | 90 | 644 | IPR016159 | - | |
| Stre11g01656 | 654 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
| Stre11g01656 | 654 | MobiDBLite | consensus disorder prediction | 431 | 462 | - | - | |
| Stre11g01656 | 654 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Stre11g01656 | 654 | MobiDBLite | consensus disorder prediction | 431 | 445 | - | - | |
| Stre11g01656 | 654 | MobiDBLite | consensus disorder prediction | 446 | 462 | - | - | |
| Stre11g01656 | 654 | MobiDBLite | consensus disorder prediction | 151 | 192 | - | - | |
| Stre11g01656 | 654 | Pfam | Exocyst complex component Exo70 N-terminal | 90 | 147 | - | - | |
| Stre11g01656 | 654 | PANTHER | EXOCYST COMPLEX PROTEIN EXO70 | 73 | 646 | IPR004140 | GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(PANTHER)|GO:0006887(InterPro) | |
| Stre11g01656 | 654 | Gene3D | Exocyst complex component Exo70 | 76 | 653 | - | - | |
| Stre11g01656 | 654 | Pfam | Exo70 exocyst complex subunit C-terminal | 266 | 641 | IPR046364 | GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stre11g01656 | K07195 | exocyst complex component 7 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Stre | Stre-Chr11:239673 | Stre11g01656 | Stre-Chr11:90676782 | dispersed | |
| Stre | Stre-Chr11:90676782 | Stre8g02611 | Stre-Chr8:89037620 | dispersed | |
| Stre | Stre-Chr11:90637821 | Stre11g01656 | Stre-Chr11:90676782 | proximal |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Stre1g04882 | . | 41 | 599 | EXO70 exocyst subunit family | AT5G59730 | 47.518 | 1.50e-172 | 502.0 | |
| Stre1g02486 | . | 6 | 610 | EXO70 exocyst subunit family | AT2G39380 | 45.098 | 0.0 | 529.0 | |
| Stre1g04881 | . | 29 | 611 | EXO70 exocyst subunit family | AT2G39380 | 46.374 | 0.0 | 527.0 | |
| Stre1g04887 | . | 11 | 599 | EXO70 exocyst subunit family | AT5G59730 | 46.88 | 0.0 | 535.0 | |
| Stre1g04272 | . | 7 | 631 | EXO70 exocyst subunit family | AT5G52340 | 69.12 | 0.0 | 932.0 | |
| Stre1g04285 | . | 7 | 631 | EXO70 exocyst subunit family | AT5G52340 | 69.12 | 0.0 | 932.0 | |
| Stre1g04741 | . | 1 | 624 | EXO70 exocyst subunit family | AT5G58430 | 52.208 | 0.0 | 629.0 | |
| Stre1g04886 | . | 29 | 611 | EXO70 exocyst subunit family | AT2G39380 | 46.374 | 0.0 | 527.0 | |
| Stre10g01007 | . | 9 | 684 | EXO70 exocyst subunit family | AT4G31540 | 66.272 | 0.0 | 900.0 | |
| Stre11g01656 | . | 65 | 653 | EXO70 exocyst subunit family | AT5G13150 | 44.408 | 5.73e-177 | 516.0 | |
| Stre11g00001 | ACH | 53 | 653 | EXO70 exocyst subunit family | AT5G13150 | 45.199 | 1.83e-173 | 507.0 | |
| Stre11g01654 | . | 65 | 653 | EXO70 exocyst subunit family | AT5G13150 | 43.535 | 4.09e-168 | 494.0 | |
| Stre11g00011 | . | 53 | 653 | EXO70 exocyst subunit family | AT5G13150 | 44.536 | 3.43e-169 | 495.0 | |
| Stre11g01516 | . | 5 | 658 | EXO70 exocyst subunit family | AT3G29400 | 41.053 | 8.42e-158 | 467.0 | |
| Stre4g02776 | . | 16 | 633 | EXO70 exocyst subunit family | AT1G72470 | 65.769 | 0.0 | 813.0 | |
| Stre4g01595 | . | 9 | 658 | EXO70 exocyst subunit family | AT3G29400 | 47.139 | 0.0 | 566.0 | |
| Stre4g02771 | . | 15 | 615 | EXO70 exocyst subunit family | AT3G14090 | 29.18 | 2.10e-77 | 253.0 | |
| Stre4g02767 | . | 15 | 615 | EXO70 exocyst subunit family | AT3G14090 | 29.18 | 2.10e-77 | 253.0 | |
| Stre4g02426 | . | 24 | 682 | EXO70 exocyst subunit family | AT5G50380 | 57.207 | 0.0 | 729.0 | |
| Stre2g02301 | . | 12 | 636 | EXO70 exocyst subunit family | AT4G31540 | 29.771 | 5.64e-82 | 271.0 | |
| Stre2g02120 | . | 9 | 658 | EXO70 exocyst subunit family | AT3G29400 | 45.455 | 0.0 | 530.0 | |
| Stre2g05316 | . | 12 | 687 | EXO70 exocyst subunit family | AT4G31540 | 39.914 | 1.88e-158 | 470.0 | |
| Stre2g02646 | . | 21 | 633 | EXO70 exocyst subunit family | AT1G72470 | 64.603 | 0.0 | 799.0 | |
| Stre2g05113 | . | 24 | 682 | EXO70 exocyst subunit family | AT5G50380 | 56.632 | 0.0 | 723.0 | |
| Stre2g02595 | . | 169 | 627 | EXO70 exocyst subunit family | AT1G72470 | 66.595 | 0.0 | 632.0 | |
| Stre2g03172 | . | 176 | 515 | EXO70 exocyst subunit family | AT3G14090 | 33.626 | 1.65e-46 | 176.0 | |
| Stre8g02611 | . | 51 | 644 | EXO70 exocyst subunit family | AT5G13150 | 38.752 | 7.16e-140 | 421.0 | |
| Stre8g00752 | . | 1 | 624 | EXO70 exocyst subunit family | AT5G58430 | 62.09 | 0.0 | 777.0 | |
| Stre3g02671 | WGDA | 32 | 608 | EXO70 exocyst subunit family | AT3G09520 | 50.342 | 0.0 | 561.0 | |
| Stre3g02667 | WGDA | 32 | 608 | EXO70 exocyst subunit family | AT3G09520 | 51.031 | 0.0 | 563.0 | |
| Stre5g02936 | . | 25 | 632 | EXO70 exocyst subunit family | AT1G72470 | 62.921 | 0.0 | 755.0 | |
| Stre5g00723 | . | 8 | 638 | EXO70 exocyst subunit family | AT5G03540 | 78.383 | 0.0 | 1002.0 | |
| Stre7g02859 | WGDA | 32 | 608 | EXO70 exocyst subunit family | AT3G09520 | 52.405 | 0.0 | 595.0 | |
| Stre7g01237 | . | 7 | 632 | EXO70 exocyst subunit family | AT5G03540 | 74.178 | 0.0 | 957.0 |