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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre11g01664 ATGGAGAGAAACGAGGCCTGTGGATTCACGGCATTTGGTGGTTTCGATATCGGAATCAACAGCAATTACAAGATTAATAAATCTCCGACTGCTGGCGCTGCTGCCGGTAGAGATCTGGTCGCCGCCGCTCGATTTGATTTCCTGAAGAAGAAACGAATGCCAAGATTCCGGCGAGGTGGTTCCGCCGGCGTCCGCCATTTTCGCACGTTCAATTCCTTTGCTACTCCTCTGCCTGCAAGTATTGTTGATCAAGGAAGGCTGACATTTCTCTTTAGTAAGAAGCTTCAAAAAAGTGATGTAGGTGTGCTAAAAAGAATTGTGTTGCCAAAGAAACCAGCAGAAACACACCTACCGGCTCTGATCGCCAAGGAAGGTATCGTGTTGGAGATGGATGATATGGATGGCATGAATGTCTGGTGTTTCAAGTTTAGGTTTTGGCCTAACAACAATAGTCGTATGTATGTCCTTGAGGGTACTGGGGACTTTGCCGAGGAACATGAGCTACAAGTTGGTGACTATATAATGTTGTATCGGGATTCTGTGAATCTCAACTATGTGATACAAGCCGTAAAAGCTTTTGAAGTTGACGAATACGCAAAGAAAGATGTGAAATCAAACCTCGATACTCTAGGAAAACCCGTGAAAGCACCACCAAATAATGGTGTTGTAATGAACCAAAACTCGCCATGGAATGGTCTTGAGGTTGAGCTATTGAACCCCATTAACTATCCTATGAATGTTCCCACTTTTGATGAACAAATGGGTATGACTTTCGTATATGATACTAGCTATTCGAATGACACTATGACTCCACTTGATTTCTTGGGTGGATTCATGACAAGCTACCCGACAACTCAACCTAACTTTGCAATTGAGAATTTGTCGATTGATGATCTGTACAAGATCTAG 909 43.34 MERNEACGFTAFGGFDIGINSNYKINKSPTAGAAAGRDLVAAARFDFLKKKRMPRFRRGGSAGVRHFRTFNSFATPLPASIVDQGRLTFLFSKKLQKSDVGVLKRIVLPKKPAETHLPALIAKEGIVLEMDDMDGMNVWCFKFRFWPNNNSRMYVLEGTGDFAEEHELQVGDYIMLYRDSVNLNYVIQAVKAFEVDEYAKKDVKSNLDTLGKPVKAPPNNGVVMNQNSPWNGLEVELLNPINYPMNVPTFDEQMGMTFVYDTSYSNDTMTPLDFLGGFMTSYPTTQPNFAIENLSIDDLYKI 302
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre11g01664 302 CDD B3-DNA 89 188 IPR003340 GO:0003677(InterPro)
Stre11g01664 302 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 83 183 IPR044800 GO:0003700(InterPro)
Stre11g01664 302 SMART B3-2 91 193 IPR003340 GO:0003677(InterPro)
Stre11g01664 302 SUPERFAMILY DNA-binding pseudobarrel domain 89 188 IPR015300 -
Stre11g01664 302 Gene3D - 87 205 IPR015300 -
Stre11g01664 302 ProSiteProfiles B3 DNA-binding domain profile. 91 193 IPR003340 GO:0003677(InterPro)
Stre11g01664 302 Pfam B3 DNA binding domain 91 188 IPR003340 GO:0003677(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre11g01664 K09287 RAV-like factor
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr11:90774433 Stre1g02807 Stre-Chr1:103029928 dispersed
Stre Stre-Chr11:90768992 Stre11g01664 Stre-Chr11:90774433 tandem
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Stre9g01748 . 107 256 B3 DNA Binding Superfamily AT3G19184 51.333 1.82e-44 154.0
Stre9g01947 . 15 660 B3 DNA Binding Superfamily AT4G21550 34.253 2.08e-99 318.0
Stre9g00115 . 3 616 B3 DNA Binding Superfamily AT4G23980 59.219 0.0 694.0
Stre9g03199 ACH 8 221 B3 DNA Binding Superfamily AT3G19184 58.065 3.80e-77 232.0
Stre9g02111 . 1 830 B3 DNA Binding Superfamily AT5G62000 54.567 0.0 827.0
Stre9g02003 . 1 481 B3 DNA Binding Superfamily AT2G33860 52.556 1.03e-160 467.0
Stre1g01233 . 1 568 B3 DNA Binding Superfamily AT5G37020 72.461 0.0 801.0
Stre1g02943 ACH 170 211 B3 DNA Binding Superfamily AT5G58280 71.429 2.96e-17 72.0
Stre1g02807 WGDA 431 713 B3 DNA Binding Superfamily AT3G24650 58.966 1.51e-92 301.0
Stre1g04720 ACH 4 714 B3 DNA Binding Superfamily AT4G32010 44.624 0.0 579.0
Stre1g00934 . 171 289 B3 DNA Binding Superfamily AT1G05930 32.558 4.45e-10 54.3
Stre1g03319 . 1 802 B3 DNA Binding Superfamily AT5G37020 62.454 0.0 926.0
Stre1g02879 . 4 222 B3 DNA Binding Superfamily AT5G58280 51.542 7.68e-72 221.0
Stre1g02933 . 1 714 B3 DNA Binding Superfamily AT4G32010 45.526 0.0 620.0
Stre1g00417 . 33 891 B3 DNA Binding Superfamily AT1G19850 58.777 0.0 965.0
Stre1g00933 . 167 289 B3 DNA Binding Superfamily AT1G05930 29.771 3.99e-10 57.0
Stre1g02888 WGDA 1 714 B3 DNA Binding Superfamily AT4G32010 46.184 0.0 626.0
Stre1g02876 . 4 222 B3 DNA Binding Superfamily AT5G58280 51.542 7.68e-72 221.0
Stre10g02494 . 62 772 B3 DNA Binding Superfamily AT5G60450 51.907 0.0 669.0
Stre10g02802 . 12 669 B3 DNA Binding Superfamily AT4G30080 55.198 0.0 685.0
Stre10g01929 . 13 583 B3 DNA Binding Superfamily AT2G46530 59.596 0.0 684.0
Stre10g02540 . 2 660 B3 DNA Binding Superfamily AT2G28350 53.394 0.0 622.0
Stre10g02555 . 2 660 B3 DNA Binding Superfamily AT2G28350 54.751 0.0 632.0
Stre11g01663 . 45 195 B3 DNA Binding Superfamily AT3G26790 50.955 5.14e-44 150.0
Stre11g00146 WGDA 23 136 B3 DNA Binding Superfamily AT3G06160 33.051 3.03e-08 53.1
Stre11g00231 . 3 503 B3 DNA Binding Superfamily AT4G32010 39.563 3.73e-108 338.0
Stre11g01664 . 45 313 B3 DNA Binding Superfamily AT3G26790 42.857 8.66e-58 186.0
Stre11g02599 . 1 489 B3 DNA Binding Superfamily AT1G19220 66.471 0.0 648.0
Stre11g02235 . 1 797 B3 DNA Binding Superfamily AT5G37020 58.374 0.0 822.0
Stre4g01722 . 115 229 B3 DNA Binding Superfamily AT3G19184 44.348 3.84e-33 125.0
Stre4g01724 . 115 236 B3 DNA Binding Superfamily AT3G19184 44.262 7.56e-37 135.0
Stre4g01721 . 112 277 B3 DNA Binding Superfamily AT3G19184 41.566 2.81e-36 133.0
Stre4g00451 . 1 485 B3 DNA Binding Superfamily AT2G33860 47.389 7.86e-142 422.0
Stre4g01354 . 106 134 B3 DNA Binding Superfamily AT5G37020 62.069 3.72e-08 45.8
Stre4g01723 . 115 233 B3 DNA Binding Superfamily AT3G19184 44.538 4.72e-33 124.0
Stre2g01511 ACH,WGDA 44 293 B3 DNA Binding Superfamily AT1G01030 46.959 2.77e-67 218.0
Stre2g06146 . 1 850 B3 DNA Binding Superfamily AT5G62000 57.555 0.0 928.0
Stre2g02326 . 1 845 B3 DNA Binding Superfamily AT5G62000 57.796 0.0 924.0
Stre2g00206 . 9 298 B3 DNA Binding Superfamily AT5G66980 23.81 4.22e-08 52.4
Stre2g02364 . 1 839 B3 DNA Binding Superfamily AT5G62000 54.118 0.0 816.0
Stre2g04309 . 1 539 B3 DNA Binding Superfamily AT4G30080 54.348 0.0 546.0
Stre2g01460 . 15 581 B3 DNA Binding Superfamily AT2G46530 58.748 0.0 675.0
Stre2g01459 . 1 616 B3 DNA Binding Superfamily AT4G23980 55.783 0.0 670.0
Stre2g03845 . 14 104 B3 DNA Binding Superfamily AT4G21550 40.86 9.17e-20 85.9
Stre2g02160 . 112 222 B3 DNA Binding Superfamily AT3G19184 45.045 4.83e-28 109.0
Stre2g06077 . 246 387 B3 DNA Binding Superfamily AT4G32010 44.056 1.77e-31 121.0
Stre2g05066 . 14 123 B3 DNA Binding Superfamily AT4G01580 30.0 3.29e-11 61.2
Stre2g05091 . 14 123 B3 DNA Binding Superfamily AT4G01580 30.0 3.29e-11 61.2
Stre8g00725 ACH,WGDA 1 733 B3 DNA Binding Superfamily AT4G32010 46.941 0.0 653.0
Stre8g02014 . 100 394 B3 DNA Binding Superfamily AT5G62000 45.033 4.18e-77 253.0
Stre8g01643 . 1 222 B3 DNA Binding Superfamily AT3G19184 50.877 2.16e-66 205.0
Stre8g00556 WGDA 86 195 B3 DNA Binding Superfamily AT3G26790 54.545 1.01e-35 135.0
Stre8g02018 . 100 394 B3 DNA Binding Superfamily AT5G62000 44.702 2.96e-76 250.0
Stre3g02936 . 1 662 B3 DNA Binding Superfamily AT4G30080 57.143 0.0 690.0
Stre3g02948 . 1 662 B3 DNA Binding Superfamily AT4G30080 49.263 0.0 556.0
Stre3g02536 . 12 652 B3 DNA Binding Superfamily AT4G30080 47.005 0.0 526.0
Stre3g02584 . 62 772 B3 DNA Binding Superfamily AT5G60450 53.857 0.0 719.0
Stre3g02431 . 68 198 B3 DNA Binding Superfamily AT3G26790 43.511 1.39e-25 100.0
Stre3g00618 . 7 613 B3 DNA Binding Superfamily AT4G23980 59.113 0.0 686.0
Stre3g02558 . 12 652 B3 DNA Binding Superfamily AT4G30080 47.158 0.0 528.0
Stre5g01926 . 62 772 B3 DNA Binding Superfamily AT5G60450 52.861 0.0 687.0
Stre5g01914 . 13 383 B3 DNA Binding Superfamily AT4G30080 41.005 4.76e-83 267.0
Stre5g03047 . 1 489 B3 DNA Binding Superfamily AT1G19220 67.396 0.0 640.0
Stre5g01296 . 173 289 B3 DNA Binding Superfamily AT1G05930 31.667 4.01e-07 48.9
Stre5g01694 . 12 665 B3 DNA Binding Superfamily AT4G30080 52.958 0.0 650.0
Stre5g01947 . 724 772 B3 DNA Binding Superfamily AT5G60450 48.148 4.20e-12 57.0
Stre7g02328 . 1 108 B3 DNA Binding Superfamily AT2G33860 40.708 1.20e-18 78.6
Stre7g00155 WGDA 25 109 B3 DNA Binding Superfamily AT5G66980 32.558 6.23e-07 47.8
Stre7g00156 WGDA 20 293 B3 DNA Binding Superfamily AT3G17010 25.517 1.69e-11 62.0
Stre7g00400 . 167 289 B3 DNA Binding Superfamily AT1G05930 29.008 1.08e-07 50.4
Stre7g00412 . 167 289 B3 DNA Binding Superfamily AT1G05930 30.534 2.41e-10 57.8
Stre7g00397 . 167 306 B3 DNA Binding Superfamily AT1G05930 28.378 3.14e-09 55.1
Stre7g01588 . 32 895 B3 DNA Binding Superfamily AT1G19850 58.447 0.0 926.0
Stre6g00109 ACH 112 221 B3 DNA Binding Superfamily AT3G19184 55.455 5.96e-37 134.0
Stre6g02645 . 1 508 B3 DNA Binding Superfamily AT2G33860 50.647 1.09e-165 485.0
Stre6g02633 . 1 508 B3 DNA Binding Superfamily AT2G33860 52.896 2.66e-171 498.0
Stre6g00129 ACH 112 268 B3 DNA Binding Superfamily AT3G19184 41.25 2.46e-31 118.0
Stre6g00107 ACH 55 199 B3 DNA Binding Superfamily AT5G42700 40.0 2.28e-29 110.0
Stre6g03356 . 3 516 B3 DNA Binding Superfamily AT4G32010 39.147 2.30e-110 346.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Stre B3 8.1e-14 CL0405 TF B3