AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre1g01850 ATGGGAGAAACCAAATCGTCATCAGATAACAGATTGAAACCATCATCAAAGTATTCTGATGAGAATCAAATGCCATTAAAGTGTAGGAACAACAATGTACAGTCGAATTTGAAGCCCAGATCGATCTGGGGTTCCAACATTGTGAAAGGGTTTTCAGCTGATAAGAAGACCAGATCCCAACAAATGGCGAAGAAATCACAACAACCACCTCAAACCAATCTCTCCAACACGAATGTGAAAAACCCTTTAGTTCTTAATCGTGCTAAACGGTCTCTGATTGGAGATCTATCATGTTCTGTCACTGCTACTCAAGTTTATCCTCAAGGGGTTCATCATCATTGTGATCAGAACCAGCGGCTGTATAAATCATCATCTTCTTCAGGTTCTCGTGATCTGTTTGCTGAGCTTGATCATCTCAGAAGCTTGCTTCAAGAATCTAAAGATAGAGAAGCTAAATTGCAGGCTGAGTTGTGTGATTTTAAGAAGAAAAATCTGCAGGCTTTGGAGCTTGAACGAACAGTTGAATTAAAGAGTAGGTCAATTGATGCTCTTAAAAGCAAAATTGATATGTTGGAATCAGAAAACACCAGTCTTTCTGAGCAGTTGCAAGAGAATATTAAAAAGGGGTTTGTTAATAGTGTTGAGGTTGATGTTCTTAAGTTGAGGAGGCTGAATGCTGAGCTTCATCTTCAAAAAAGAAATCTTTGTTGCAGAATTTCTTCAATGGAGTCAGAACTAGCTGCCCTTGCTAAAGATTCTGAGAATGAATTTGTCAAGAAGATGAAAACGGAGGCATCTATGTTAAGACAAACAAATGAAGATTTATGTAAACAAGTTGAAGATCTACAAGTAAGCCGATTGAACGAGGTTGAGGAGCTTGTATATCTTAGATGGGTTAATTCTTGTCTTAAAAATGAGTTACAAAATTCAGCTGAAATGACATCAAGTCCAGCTGCTGTTGAGTGGCTCAATGGTTGTATATCAAGTGATGAACACGGAAATAAATTAAATTTGGTTAGAAAAATGACAAAATGGCCTGTTTTAGATGAATATAAACTAAATCTTGGTTGGTCAGAAGGAAGAAGGCATTCAATAAGTGGATCAAATTGCTGTCAGGAAGATCCGGTGGTGAATAAACGAAGACAATCTGATGGTTTTATAGAAATGGACGGTGTAGATGATCTGAAAGGGTCACAATCGCGTGAAGCTACAAAACTGAAAGCATTTTTGGATGTTGAAAAACGGGCGTTGCGTGTTCCTAATCCTCCTCCGAGACCTTCTAGTTTTAGTTCTAAGGAACATACAGAGGTTACTAGTCAAGCACGACCACCGCCGCCGCCGCCACCTCCACCGCCTCCGCTGAAGTTTCATGGAAGAAGTAATGGCGGTGGGGTTGTTCAAAGAGCTCCAGAAGTGGTTGAGTTTTATCATTCACTTATGAAAAGGGACTCTAGAAAAGATTCCTTAATATGTGATGCTGTAGATGTCAATAATGTCAGAAATAGTATGATTGGTGAAATTGAAAACCGGTCATCACATTTGCTTGCTATAAAGGAAGATGTTGAGACTCAAGGGGAATTTGTGAATTCTTTAATACGCGAGCTCAACAATGCTGTTTATCCAGATATAGAAGATGTCGTGGCTTTTGTGAACTGGTTGGATGATGAACTCTGCTTTCTTGTGGATGAGAGGGCTGTGCTGAAACACTTTGATTGGCCGGAGAAGAAAGCAGACACATTAAGAGAGGCAGCATTTGCATATCTGGATTTAAACAAGTTGGAGCATGAAATTTCAAATTACAAAGACAATTTCCACATGCCATGTGATTTGGCATTGAAAAAAATGGTTTCCTTGTCTGAGAAGATGGAGCGTATTGTTTATAACCTTCTTAGAACAAGAGATCCCTTGATGCGTAATTGCAAAGAGTTTCATATTCCCACAGATTGGATGCTTGATTCAGGAATATTAAACAAGATTAAGCTGGGATCAGTTAAATTGGCAAAGAAATATTTGAGAAGAGTCGCTACAGAAATTCAAACGAAAGGAATATCAGAGAAAGATTCTTCAATGGACTATATGCTTCTTCAAGGAGTGAGATTCGCGTTCCGTATTCATCAGTTTGCTGGTGGATTTGATGTTGATACAATGCATGCGTTTGAGGAGCTTCGCAATGTGGCTCTTATTTTAAACAAAAAGTAG 2199 38.84 MGETKSSSDNRLKPSSKYSDENQMPLKCRNNNVQSNLKPRSIWGSNIVKGFSADKKTRSQQMAKKSQQPPQTNLSNTNVKNPLVLNRAKRSLIGDLSCSVTATQVYPQGVHHHCDQNQRLYKSSSSSGSRDLFAELDHLRSLLQESKDREAKLQAELCDFKKKNLQALELERTVELKSRSIDALKSKIDMLESENTSLSEQLQENIKKGFVNSVEVDVLKLRRLNAELHLQKRNLCCRISSMESELAALAKDSENEFVKKMKTEASMLRQTNEDLCKQVEDLQVSRLNEVEELVYLRWVNSCLKNELQNSAEMTSSPAAVEWLNGCISSDEHGNKLNLVRKMTKWPVLDEYKLNLGWSEGRRHSISGSNCCQEDPVVNKRRQSDGFIEMDGVDDLKGSQSREATKLKAFLDVEKRALRVPNPPPRPSSFSSKEHTEVTSQARPPPPPPPPPPPLKFHGRSNGGGVVQRAPEVVEFYHSLMKRDSRKDSLICDAVDVNNVRNSMIGEIENRSSHLLAIKEDVETQGEFVNSLIRELNNAVYPDIEDVVAFVNWLDDELCFLVDERAVLKHFDWPEKKADTLREAAFAYLDLNKLEHEISNYKDNFHMPCDLALKKMVSLSEKMERIVYNLLRTRDPLMRNCKEFHIPTDWMLDSGILNKIKLGSVKLAKKYLRRVATEIQTKGISEKDSSMDYMLLQGVRFAFRIHQFAGGFDVDTMHAFEELRNVALILNKK 732
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre1g01850 732 Coils Coil 583 603 - -
Stre1g01850 732 SUPERFAMILY Formin homology 2 domain (FH2 domain) 443 596 - -
Stre1g01850 732 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 34 724 IPR040265 GO:0009658(PANTHER)|GO:0009707(PANTHER)
Stre1g01850 732 MobiDBLite consensus disorder prediction 7 39 - -
Stre1g01850 732 MobiDBLite consensus disorder prediction 417 463 - -
Stre1g01850 732 Coils Coil 258 278 - -
Stre1g01850 732 MobiDBLite consensus disorder prediction 440 456 - -
Stre1g01850 732 Coils Coil 174 208 - -
Stre1g01850 732 MobiDBLite consensus disorder prediction 1 39 - -
Stre1g01850 732 Coils Coil 136 156 - -
Stre1g01850 732 MobiDBLite consensus disorder prediction 54 79 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre1g01850 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr1:47101441 Stre1g03469 Stre-Chr1:116380089 dispersed
Stre Stre-Chr1:47101441 Stre1g01853 Stre-Chr1:47199121 proximal
Stre Stre-Chr1:47069289 Stre1g01850 Stre-Chr1:47101441 tandem