AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre1g04047 ATGGAACTCACACGCCATCTGCAACCACTACTCCTTGTCTTCCTTTTCTCCGTCGTCACCTCCGCCCACTACTCCGATGACCATGACTCCACCCTCCAAATCTCCACCACCAAACCACCGCTTTCATGGCCGGAGACTGTCCTTCAAATGCAAACCGACGACCACATTCGCCTCACCTATCTCTCCAGCTTAGTCGCCGGCCGGTCTTTTGTCCCCATCGGCTCCGGCAGACAGGTTATACAAAGCCCTACTTACGTCGTCAAGGCTAAGATTGGCACACCGGCTCAGACCGTGCTTATGGCGCTTGATACCAGCACCGACCTGACCATGGTTCCGTGCACCGGCTGCGCCGGTTGTAGCTCTACACCCTTTGCTTTTGCCAAATCTGTCACTTTCAAGTCTCTTAATTGCGCTGCTGCACAATGCAAGCAGGTGCAAAACTCAAACTGTCTAGGAACCACTTGCTTGATGAACATGACATACGGAGCCTCATCTATAGCCGCTAACTTGGCTCAAGACAACATAACCCTAGCCACCGACTCAGTCCGCGGCTACAATTTCGGTTGCATTCAAAAGCTGTAG 582 52.75 MELTRHLQPLLLVFLFSVVTSAHYSDDHDSTLQISTTKPPLSWPETVLQMQTDDHIRLTYLSSLVAGRSFVPIGSGRQVIQSPTYVVKAKIGTPAQTVLMALDTSTDLTMVPCTGCAGCSSTPFAFAKSVTFKSLNCAAAQCKQVQNSNCLGTTCLMNMTYGASSIAANLAQDNITLATDSVRGYNFGCIQKL 193
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre1g04047 193 SUPERFAMILY Acid proteases 82 191 IPR021109 -
Stre1g04047 193 PANTHER ASPARTYL PROTEASES 49 190 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Stre1g04047 193 Gene3D Acid Proteases 69 192 IPR021109 -
Stre1g04047 193 CDD pepsin-like 85 190 IPR034164 -
Stre1g04047 193 ProSiteProfiles Peptidase family A1 domain profile. 85 193 IPR033121 -
Stre1g04047 193 Pfam Xylanase inhibitor N-terminal 85 191 IPR032861 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre1g04047 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr1:125385305 Stre6g02832 Stre-Chr6:91150226 dispersed
Stre Stre-Chr1:125385305 Stre11g02201 Stre-Chr11:101265203 transposed