AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre1g04055 ATGCATTCATTCGGGTACAGAGCCAACGCTTTGCTCACTTTTGCCATTACAATACTTGCTGTAATGTGCGCAATCGCATCGGTCTCCGACAATTTCAGTTCTCCTTCTCCTACATCTCAAGTTCAGGTATCTGTTTCTCTCTGTTTGAACATCAATTGGTTCCGGAATAAGCCAGACGGCGACGATGAGGTCAGCATGACAATGAACATATCAGCAAATTTACAATCATTATTTACATGGAATACAAAACAGGTTTTTGTCTTTCTGGCAGCTGAGTATGAAACGCCACAGAATGCACTAAATCAGGTATCCTTGTGGGATGGAATCATTCCGGCAAAAGAGCATGCAAAGTTCAACATCCATACAACTAACAAATACCGTTTTGTAGATCAGGGAAGTAATTTACGGGGAAGAGATTTTAACATGACATTGCATTGGCATGTGATGCCCAAAACTGGGAAGATGTTTGCTGACAAAATAGTTATGACCGGATTTAGGTTACCTCAATCATATCGGTGA 519 41.04 MHSFGYRANALLTFAITILAVMCAIASVSDNFSSPSPTSQVQVSVSLCLNINWFRNKPDGDDEVSMTMNISANLQSLFTWNTKQVFVFLAAEYETPQNALNQVSLWDGIIPAKEHAKFNIHTTNKYRFVDQGSNLRGRDFNMTLHWHVMPKTGKMFADKIVMTGFRLPQSYR 172
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre1g04055 172 PIRSF SPC3 1 172 IPR007653 GO:0005787(InterPro)|GO:0006465(InterPro)|GO:0016020(InterPro)
Stre1g04055 172 PANTHER MICROSOMAL SIGNAL PEPTIDASE 23 KD SUBUNIT SPC22-23 1 172 IPR007653 GO:0005787(PANTHER)|GO:0005787(InterPro)|GO:0006465(InterPro)|GO:0006465(PANTHER)|GO:0016020(InterPro)|GO:0045047(PANTHER)
Stre1g04055 172 Pfam Signal peptidase subunit 1 169 IPR007653 GO:0005787(InterPro)|GO:0006465(InterPro)|GO:0016020(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre1g04055 K12948 signal peptidase complex subunit 3 [EC:3.4.-.-]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr1:22034744 Stre1g04055 Stre-Chr1:125448766 dispersed
Stre Stre-Chr1:125448766 Stre7g01785 Stre-Chr7:82444732 transposed