AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre1g04079 ATGGATCAGCAGCATATCCTCTACGATGAAGTTGAAGTAAACGGCAGCAAGACAGCATTGACTTTGTCCACCGACGGAATACTGCGGTGGTACGATCACGTCAACGTCCTTCGTTGCCTCTCTGTCGACGGTGAAGTTCTCGGAGTATCAATTGTCGGACAACAAATCATAATCAGGTCGTTTGTTGAGACTGATGGTTTCTGCTTTGCAATTTGCAATCGAGGTTTGACGAGGAAAAGCTTTGCATTCGAAGCATTATCGGAAAATTCATTACAGAATCTGTACGACAAGATCCAGGGATACATTGACACATTAGGCAGGCCAAAGAAGTTGTTTATATTTGTTAATCCATTTGGAGGAAGGAAATCCGCGTCCAAAATTTTTACCGATGATGTAAAACCTATACTCGAGGATGCTAATATCGAATATACGTTACAAGAAACTAAATATCAACTTCACGCAAAGGAAGTTTCTCATAGTTTGGATCTTACAAAGTACGATGGCATTCTTTGTGTCAGTGGAGATGGAATATTGGTTGAGGTTGTTAATGGATTGCTTGAAAGAGAAGATTGGCAAGTAGCACTCAAGATGCCTATTGGAGTCGTACCTGCAGGTACTGGAAATGGAATGATAAAATCTCTTCTAGATGCAGCTGGTCAACCATGTACCGTTGCTTATGCTATGCTTTCTGTAATTCAAGGGCATAAACGCTCTTTGGATGTAGCTACAATCTGGCAGGGAGAGGCTAGATTTTTTAGCGTCTTGATGCTTGCATGGGGTAAAATTAAAGTAGTTTCCTTTTACAAGCACAGTCTTTTATTTATTGATTTTTTTAATACTTGTAACTGGTTTCTGTTGTTTTTATTTTTATTTTTTGAAGGACTAATAGCTGATATAGATATAGAGTCTGAGCAGTATCGATGGATGGGAGGTGCTCGAATGGATATTTATGGTCTACAACGAGTTCTATCATTGCGGAAATATAATGGGTGTATTTCGTTTGTACCTGCTTCTGGATTTGAAGATGTAGGAGAACCAGCAAGTGTTGTTGTTGAACCTCTTAAAACTCGACACCATGGTTATGAGGGTCCAAAAGTTGATTTAGGGGGTTCAAGTTGGAGAAAGATTGATGGTCCGTTTGTTGGCGTTTGGCTTCAAAATGTTTCTTGGGGTTCTGAAAATGCCAAGGCTGCACCCGATGCTAAGTTTGATGATGGATATCTAGACTTGATTGTAATGCGCGAATGCCCGAAGTTAAGGTTGTTATCATTGATGTCTGAAATGAGCAACGGGCATTATGTAAAATCCCCATATGTTTTGTATATCAAGGTGAAGGCGGTGATCTTGGAGCCGGGTTCGAGGACGAGTGAGCCAACGAAGCAAGGGATTATAGATTCGGATGGTGAAGTGTTGGCAAGAGGCAAAGGAACGTACAAGTGTCACTTAAACTCTTTGATGCGTTATGATAAGCTACAAATCGTTGTGGATCAAGGGTTGGCTACTTTGTTTACCCCTATTTAA 1521 40.63 MDQQHILYDEVEVNGSKTALTLSTDGILRWYDHVNVLRCLSVDGEVLGVSIVGQQIIIRSFVETDGFCFAICNRGLTRKSFAFEALSENSLQNLYDKIQGYIDTLGRPKKLFIFVNPFGGRKSASKIFTDDVKPILEDANIEYTLQETKYQLHAKEVSHSLDLTKYDGILCVSGDGILVEVVNGLLEREDWQVALKMPIGVVPAGTGNGMIKSLLDAAGQPCTVAYAMLSVIQGHKRSLDVATIWQGEARFFSVLMLAWGKIKVVSFYKHSLLFIDFFNTCNWFLLFLFLFFEGLIADIDIESEQYRWMGGARMDIYGLQRVLSLRKYNGCISFVPASGFEDVGEPASVVVEPLKTRHHGYEGPKVDLGGSSWRKIDGPFVGVWLQNVSWGSENAKAAPDAKFDDGYLDLIVMRECPKLRLLSLMSEMSNGHYVKSPYVLYIKVKAVILEPGSRTSEPTKQGIIDSDGEVLARGKGTYKCHLNSLMRYDKLQIVVDQGLATLFTPI 506
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre1g04079 506 ProSiteProfiles DAG-kinase catalytic (DAGKc) domain profile. 106 248 IPR001206 GO:0016301(InterPro)
Stre1g04079 506 Pfam YegS C-terminal NAD kinase beta sandwich-like domain 386 474 IPR045540 -
Stre1g04079 506 Gene3D - 91 239 IPR017438 -
Stre1g04079 506 FunFam Sphingosine kinase 2 94 239 - -
Stre1g04079 506 PANTHER SPHINGOSINE KINASE 77 474 IPR050187 GO:0001727(PANTHER)|GO:0005737(PANTHER)|GO:0006665(PANTHER)|GO:0016020(PANTHER)|GO:0016310(PANTHER)|GO:0043231(PANTHER)|GO:0046512(PANTHER)
Stre1g04079 506 SUPERFAMILY NAD kinase-diacylglycerol kinase-like 107 481 IPR016064 -
Stre1g04079 506 Gene3D - 284 486 - -
Stre1g04079 506 SMART dagk-c4a-7 110 245 IPR001206 GO:0016301(InterPro)
Stre1g04079 506 Pfam Diacylglycerol kinase catalytic domain 110 243 IPR001206 GO:0016301(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre1g04079 K04718 sphingosine kinase [EC:2.7.1.91]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr1:125677450 Stre4g00371 Stre-Chr4:52518747 dispersed