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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre1g04116 ATGGCTACGACGTCGTTTCGCTCTTACGCCGTCGTATCGCTTCTCATGATCTTCTTCATACAACCTTCGATCTCCATCTACTGTGACGAAGATGATTGCTACGATCTACTCGGGGTCTCGCAAAATGCTAATTCATCTGAAATCAAGAGAGCTTACTACAAGCTCTCGTTAAAGCATCATCCGGATAAAAACCCAGATCCTGAATCGAAAAAGTTGTTTGTTAAAATTGCGAATGCTTATGAGATATTAAAAGATGAAGTTACAAGAGGCCAGTATGATTATGCAATTGAGCATCCAGAGGAGGTATTCTACAATACAGCTCGCTATTATCATGCTTACTATGGTCACAAAACTGATCCTCGTGCTGTTTTGGTGGGACTTCTTATAGTCCTTTCGGGAATTCAATATCTAAATCAATGGACAAGGTATCATCAGGCTATTGACATGGTAAAGAGGACACCAGCTTATAAAAATAAATTAAAGGCATTAGAACTCGAACGCACGGGGGCAATTTCAAGCAAAAAGAAGAATGGTTACAAGATCGACAAGAAATTGCAGGAAGATATTAGCAAGGAACTTGAATTGCAGATAAAAGGTGCTGAAAAACCATCAATATGGGGACTTCTTGGTGCTCGTTTCATACTTTTGCCATATACTCTTGGAAAGCTAGTTTTATGGTATGGATGTTGGTATTGGAGGTACAAGATAAACAAAACTTCATATTCTTGGGAAGACGCGTCTTATTTGACTAGACGCGCTCTCGGAGCACCTTCTGAATCATGGGAATATCTTGATGAATCAACCAAGAAAGATCTCATCGATCGACACTTATGGGTAAAGTCCAACTTAGAGAACTATCTTTTCGAGATGCGAAAAGAGTCAAAGAGAAGAAGGTAA 897 39.58 MATTSFRSYAVVSLLMIFFIQPSISIYCDEDDCYDLLGVSQNANSSEIKRAYYKLSLKHHPDKNPDPESKKLFVKIANAYEILKDEVTRGQYDYAIEHPEEVFYNTARYYHAYYGHKTDPRAVLVGLLIVLSGIQYLNQWTRYHQAIDMVKRTPAYKNKLKALELERTGAISSKKKNGYKIDKKLQEDISKELELQIKGAEKPSIWGLLGARFILLPYTLGKLVLWYGCWYWRYKINKTSYSWEDASYLTRRALGAPSESWEYLDESTKKDLIDRHLWVKSNLENYLFEMRKESKRRR 298
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre1g04116 298 FunFam Chaperone protein dnaJ 50 19 119 - -
Stre1g04116 298 SMART dnaj-3 31 88 IPR001623 -
Stre1g04116 298 SUPERFAMILY Chaperone J-domain 27 106 IPR036869 -
Stre1g04116 298 ProSitePatterns Nt-dnaJ domain signature. 73 92 IPR018253 -
Stre1g04116 298 Gene3D DnaJ domain 20 119 IPR036869 -
Stre1g04116 298 CDD DnaJ 32 85 IPR001623 -
Stre1g04116 298 ProSiteProfiles dnaJ domain profile. 32 96 IPR001623 -
Stre1g04116 298 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 25 8 298 IPR044632 GO:0005789(PANTHER)|GO:0006457(InterPro)|GO:0006457(PANTHER)
Stre1g04116 298 Pfam DnaJ domain 32 93 IPR001623 -
Stre1g04116 298 PRINTS DnaJ domain signature 34 52 IPR001623 -
Stre1g04116 298 PRINTS DnaJ domain signature 68 88 IPR001623 -
Stre1g04116 298 PRINTS DnaJ domain signature 52 67 IPR001623 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre1g04116 K19371 DnaJ homolog subfamily C member 25
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr1:126176934 Stre6g02974 Stre-Chr6:93131871 dispersed
Stre Stre-Chr1:126176934 Stre7g02548 Stre-Chr7:99289178 transposed