AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stre1g04131 | ATGGCTTTGAAGGCAATACCAATCTGGGTTTGTTGCAATCACTCTCTTTCTCAATCGGATTTCGTTCAAAACAAGAAAAAATCCCCCTTTTTTACAAATCATAGGGTTAATCTTGCAAAATTAAGGAAATGGGAGTGTTTGGGCTTGAAATTGGTCCAACCTGAAAGATCGCAAATCCAAGTTGACGATGAAGAGAAGCCGTTGACTCCACCTGATTTGGGTTCAACTTCTGCAGATGGCACAATTGAAGAAACCCAGATCACGGAATCGAAAGGGTTTCATCGAGATTTGAATTCTTTACCGAAACCTCTAACCGCTACGGATCTTGTCTCTTCTAGTAATGATGGCTCAAAGGTCCGAGTCGCTTACCAGGGTTTACCAGGTGCATATAGTGAAGCAGCTGCTCTTAAAGCATACCCAAAATGTGAAACAGTTCCATGTGACCAATTTGAATCTGTATTCAAGGCGGTTGAATTATGGTTGGTGGATAAAGCAGTACTACCAATAGAAAACTCTGTCGGTGGAAGTATTCATAGAAATTACGATTTACTCCTTCGTCATCGGTTGCACATTGTTGGTGAAGTGCAATTAACTGTTAATCATTGCCTTTTGGGTATTCCGGGAGTAAGAAAAGAGGAGTTAAAGCGCGTATTAAGCCACCCTCAGGCACTTGATCAGTGTGAAGGTGCATTAAATAAATTAGGTGTTGTGAGAGTTAGTGCTGAAGATACCGCTCTTGCAGCTCAGATTGTAGCCTCTGAAGGCGTACGAGAGACCGGAGCAGTTGCGAGTTCACGAGCTGCAGAAATATATGGACTTGATATTCTAGCGCAAATGATCCAGGATGATTTAGATAACGTTACGCGTTTTCTAATACTAGCAAGAGAACCTATAATCCCAGGAACAGACAAACCCCATAAGACGAGCATTGTGTTTACATTAGAAGAAGGCCCGGGGGTATTGTTTAAAGCATTAGCGGTGTTCGCTTTAAGGGAGATCAACTTATCAAAGATCGAAAGCCGACCTCAAAGGAAACGTCCACTCAGGATTGTTGATGATAGCAATAAGGGTAGTGCAAAATACTTTGACTACCTATTTTACATTGACTTTGAAGCTTCAATGGCTGAACCTCGTGCCCAGTATGCTCTAGGACATCTACAGGAATTTTCCAGGTTTCTTCGTGTTCTGGGCTGCTACCCGATGGATACGACTATATAA | 1218 | 42.2 | MALKAIPIWVCCNHSLSQSDFVQNKKKSPFFTNHRVNLAKLRKWECLGLKLVQPERSQIQVDDEEKPLTPPDLGSTSADGTIEETQITESKGFHRDLNSLPKPLTATDLVSSSNDGSKVRVAYQGLPGAYSEAAALKAYPKCETVPCDQFESVFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLTVNHCLLGIPGVRKEELKRVLSHPQALDQCEGALNKLGVVRVSAEDTALAAQIVASEGVRETGAVASSRAAEIYGLDILAQMIQDDLDNVTRFLILAREPIIPGTDKPHKTSIVFTLEEGPGVLFKALAVFALREINLSKIESRPQRKRPLRIVDDSNKGSAKYFDYLFYIDFEASMAEPRAQYALGHLQEFSRFLRVLGCYPMDTTI | 405 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stre1g04131 | 405 | FunFam | Arogenate dehydratase | 203 | 283 | - | - | |
| Stre1g04131 | 405 | PANTHER | PREPHENATE DEHYDRATASE P PROTEIN | 41 | 404 | - | GO:0004664(PANTHER)|GO:0005737(PANTHER)|GO:0009094(PANTHER)|GO:0009507(PANTHER)|GO:0047769(PANTHER) | |
| Stre1g04131 | 405 | CDD | ACT-CM-PDT | 307 | 400 | - | - | |
| Stre1g04131 | 405 | ProSitePatterns | Prephenate dehydratase signature 1. | 271 | 293 | IPR018528 | GO:0004664(InterPro)|GO:0009094(InterPro) | |
| Stre1g04131 | 405 | Gene3D | - | 113 | 202 | - | - | |
| Stre1g04131 | 405 | MobiDBLite | consensus disorder prediction | 58 | 79 | - | - | |
| Stre1g04131 | 405 | ProSitePatterns | Prephenate dehydratase signature 2. | 335 | 342 | IPR018528 | GO:0004664(InterPro)|GO:0009094(InterPro) | |
| Stre1g04131 | 405 | ProSiteProfiles | ACT domain profile. | 309 | 400 | IPR002912 | - | |
| Stre1g04131 | 405 | SUPERFAMILY | Periplasmic binding protein-like II | 120 | 301 | - | - | |
| Stre1g04131 | 405 | FunFam | Arogenate dehydratase | 115 | 202 | - | - | |
| Stre1g04131 | 405 | FunFam | Arogenate dehydratase | 302 | 403 | - | - | |
| Stre1g04131 | 405 | Gene3D | - | 203 | 283 | - | - | |
| Stre1g04131 | 405 | Pfam | Prephenate dehydratase | 121 | 296 | IPR001086 | GO:0004664(InterPro)|GO:0009094(InterPro) | |
| Stre1g04131 | 405 | SUPERFAMILY | ACT-like | 290 | 401 | IPR045865 | - | |
| Stre1g04131 | 405 | CDD | PBP2-Ct-PDT-like | 118 | 297 | - | - | |
| Stre1g04131 | 405 | ProSiteProfiles | Prephenate dehydratase domain profile. | 120 | 295 | IPR001086 | GO:0004664(InterPro)|GO:0009094(InterPro) | |
| Stre1g04131 | 405 | Gene3D | - | 302 | 403 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stre1g04131 | K05359 | arogenate/prephenate dehydratase [EC:4.2.1.91 4.2.1.51] | ||||
| Stre1g04131 | K04518 | prephenate dehydratase [EC:4.2.1.51] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Stre | Stre-Chr1:126431669 | Stre9g01883 | Stre-Chr9:35014114 | dispersed | |
| Stre | Stre-Chr1:126431669 | Stre5g01876 | Stre-Chr5:86528130 | transposed |