AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre1g04358 ATGGATAAACATATTGACAATGTTGATAAACGGGTCGAGTGGTTGCATTCTGAACAGTATTCAGCTGCTTGTAACATTTTTGGAGATCCGCAAAAAACCACACGAATTGGGGATGAATATCAGACACAAATCCCATCTTTGATGACAAAAAATGATGATCTAAACATCTTTGAATTTGGTATGTCAATTCCTATCACATGGATTCACAATCAAGAAAACAACAAGAAAGAAACCATGAAGATTCAAGCAAATGCAAAGGGTAAATCTGGTATTGTCGGTTTGGTTCCAGTTCCTTGTTCGTCAGGCGAAGAATCTTGGAGTGCGATTGAACGTGATAGTTTCATTCTTGGCTTATATATATTTGGCAAGAATCTTCGCGTTGTAAGCAAGTTCATGGGGAATAAAGGAATTAAAAATGTGATATCTTATTACTATGGGAAGTTTTATAAAAGCAATGAACACCAAAAATGGTCAATGTATCGGAAGAAAAGAATTAGCATCGGAAAAAAGATTTTCAACGGGTGGAGGCTACATGAGCTTTTGTCTCGCTTACTTTCGGATGTGACTGATGAGTGTAAAGCTAGTCTGACACAGGTTATTAGATTTTTCGAGGCGGGAAAACTTTCGTTTGAGAAGTATGTATTTAGTTTAAGGGATATTATGGGTGTTGATCTTCTTGTACAAGCGGTAGCAATTGGCAAAGGAAAACAGGATCTTACTATCAAAACCAGAACGCGATTAAGAAGCAAAAAGATTGAATCCACATGCTCGTCTCTTAAAACAGAAGAAATTGTTAATATTTTGAAGGACCGAATCGGATTAAGCAAAGCGCGGTTAAATGAGTTCTTTTGGACAGCGGTGTGGCCTCGCCTTTTAGCACGAGGATGGCATTCTGAACAACTTAAAAACTACGCGTTCCAAAAGTCGAAGAATTTAGTGTTTCTTGCACCTGGTGTGACAAAGTTTTCTAGAAGGAGTTTGGTCAAAGGAAGTCAGTATTTTGAGTCGTTGACTGAAGTTTTGAATAAAGTTGCATCTGAACCGCACCTTCTTGACCACGAACCAGAAAAGGATCGGTTGGTGGAGCCACCTGTGACACACGGGTCGGATGATGAACAAGATTCGATGAAATGCATCGTTGTGGATACCAGTTTTGTTGGACTTGTTAAAGTCAAAGAGCTCACTAGTTTGACTGATGTTTCCAGAGAAAATGAACACGAAACAACTGAAGAATCTCGAAATGAAGATATGAATCATAACAAAGTGGAAGATTCACCAGCATGTGAAGCTGGAAACAATGTTGATCCAGATGTGCAACCAGAAAGAAAAATGAAGTTGGTATTCAAACAAAAAACAAAACGCCAAAGGGTTGATGATAATATTAATAATGAAAAGAAGCGTTCAAGGATCGTGATCGACTTGAACAACCCTCGAGTGGGTCCCGGTTCGAATGATGATAACAAATCGTCTTTTGCTAAACAATCGGTTTTATTAAAAACAACCGTTAACCAGGATCCTGACTCGTTGACTCGTGTTACTAATGGTCAACGACATAGTAGAAGAAATCGTGCATTGACCACAAAAGCGTTGGAATCCCTCGCGAATGGATTCATTAACCCGAAAAAGAAGATGAGAGAGACCGAGGATGAGACGCGTACGCGTGTTCGTGCTAAAACATCTCGTGTTTCGAGTTGTGGTGCGCGTTATTTAGTGGATGGAGCCTTTGATGGTTCGTCCCGTCTTTTCAACGAGTCTCCAAAATGA 1764 39.57 MDKHIDNVDKRVEWLHSEQYSAACNIFGDPQKTTRIGDEYQTQIPSLMTKNDDLNIFEFGMSIPITWIHNQENNKKETMKIQANAKGKSGIVGLVPVPCSSGEESWSAIERDSFILGLYIFGKNLRVVSKFMGNKGIKNVISYYYGKFYKSNEHQKWSMYRKKRISIGKKIFNGWRLHELLSRLLSDVTDECKASLTQVIRFFEAGKLSFEKYVFSLRDIMGVDLLVQAVAIGKGKQDLTIKTRTRLRSKKIESTCSSLKTEEIVNILKDRIGLSKARLNEFFWTAVWPRLLARGWHSEQLKNYAFQKSKNLVFLAPGVTKFSRRSLVKGSQYFESLTEVLNKVASEPHLLDHEPEKDRLVEPPVTHGSDDEQDSMKCIVVDTSFVGLVKVKELTSLTDVSRENEHETTEESRNEDMNHNKVEDSPACEAGNNVDPDVQPERKMKLVFKQKTKRQRVDDNINNEKKRSRIVIDLNNPRVGPGSNDDNKSSFAKQSVLLKTTVNQDPDSLTRVTNGQRHSRRNRALTTKALESLANGFINPKKKMRETEDETRTRVRAKTSRVSSCGARYLVDGAFDGSSRLFNESPK 587
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre1g04358 587 MobiDBLite consensus disorder prediction 399 441 - -
Stre1g04358 587 PANTHER ATROPHIN-RELATED 16 440 - GO:0003714(PANTHER)|GO:0005634(PANTHER)
Stre1g04358 587 MobiDBLite consensus disorder prediction 348 373 - -
Stre1g04358 587 MobiDBLite consensus disorder prediction 399 423 - -
Stre1g04358 587 ProSiteProfiles SANT domain profile. 101 152 IPR017884 -
Stre1g04358 587 Gene3D - 98 164 - -
Stre1g04358 587 SUPERFAMILY Homeodomain-like 104 152 IPR009057 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre1g04358 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr1:129837864 Stre1g04358 Stre-Chr1:129898343 dispersed
Stre Stre-Chr1:129898343 Stre2g04148 Stre-Chr2:147626757 dispersed
Stre Stre-Chr1:129898343 Stre1g04361 Stre-Chr1:129917628 proximal