AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre1g04387 ATGACGAAAACACTAGTGAAATACGCCGTAGTGGACGCATTTACAGACACGCCGTTTAAAGGAAATCCGGCAGCCGTGTGCTGGTTAGAGGACATCGAGAAAGATGATAAGTGGTTGCAATCAGTTGCCACTGAATTCAATATTTCTGAGACTTGTTATTTGACTCCGATTGTTGAACACGGTTCAGATAACCCTAGATTTCGTCTCCGGTGGTTCACTCCTGCAGCTGAGGTAGAGCTTTGTGGTCATGCAACTTTAGCAGCTTCCCACTTCCTGTTTCAGTCTGGATTGGTGAATTCTAACACGATTGAATACTCAACCCTTTCCGGAATTTTAACTGCCAAAAGAATACCAGCTAACAAGATCAACAACTCATCAAACGGTGAATCACATGAAAGCTTTTTCATTGAATTGGATTTCCCCGTTTTACCAGTTTCAGATTACAATGATCTTGAGGTTTCTGCAATTTCAGAAATACTAAACGGTGTTTCTGTTGTTGATGTAAAGAAGAACGCACTTGATGATCTCTATGTGGTTCTTCCAACTGCAAAAGATGTTGAAGAATTTAAGCCACAGATTAATAAGATTAAAGAATCTCCAAGCAGAGGAATAGTAATTACAGCACCTGCCCCTAACGGGTCGGGGTTTGACTTTTATAGTCGCTTCTTCTGCCCAAAACTGGGAATTGATGAGGATCCTGTTTGTGGGAGTGCGCATTGCGCGTTAGCAGCCTATTGGCATGAGAAGTTGGGGATATGTGATTTTGTTGCATATCAGGCATCACCTAGAAGTGGCGTGTTACACGTGCATATTGATAAGGAGAAACAAAGAGTACTTCTTCGAGGTAAAGCCACCACAGTCATGGAAGGATCTCTTTTGGTCTAA 885 42.15 MTKTLVKYAVVDAFTDTPFKGNPAAVCWLEDIEKDDKWLQSVATEFNISETCYLTPIVEHGSDNPRFRLRWFTPAAEVELCGHATLAASHFLFQSGLVNSNTIEYSTLSGILTAKRIPANKINNSSNGESHESFFIELDFPVLPVSDYNDLEVSAISEILNGVSVVDVKKNALDDLYVVLPTAKDVEEFKPQINKIKESPSRGIVITAPAPNGSGFDFYSRFFCPKLGIDEDPVCGSAHCALAAYWHEKLGICDFVAYQASPRSGVLHVHIDKEKQRVLLRGKATTVMEGSLLV 294
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre1g04387 294 SUPERFAMILY Diaminopimelate epimerase-like 7 293 - -
Stre1g04387 294 NCBIfam PhzF family phenazine biosynthesis isomerase 8 292 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
Stre1g04387 294 Pfam Phenazine biosynthesis-like protein 11 290 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
Stre1g04387 294 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 142 282 - -
Stre1g04387 294 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 10 290 - -
Stre1g04387 294 PANTHER PHENAZINE BIOSYNTHESIS PROTEIN 6 294 IPR003719 GO:0003824(InterPro)|GO:0005737(PANTHER)|GO:0009058(InterPro)|GO:0016853(PANTHER)
Stre1g04387 294 PIRSF Ismrse-PhzF 4 294 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre1g04387 K06998 trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr1:130418379 Stre1g04390 Stre-Chr1:130445348 dispersed
Stre Stre-Chr1:130418379 Stre1g04389 Stre-Chr1:130440067 proximal