AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre1g04394 ATGGGATTCAGTTCAGTCTACAAGGTATTACAGGAGGTTTTTCCACAGGTTGATTCTCGTGTTTTAAAAGCTGTTGCTATAGAACACTCTAAGGATGCTGATGTGGCTGTAGAAGTTGTTCTTCTTGAGATCATTCCTCAACTTCCTGAAAAACCAAAACCATCTACAGTTGGTTCTTCAAGTAATAGTAACATTCCACTCAGTTTCTTTGAAGGTGGTGATGAAATTAATCAACCAAAGTCAACTATGGATCAATTAGTTATTAATTCATATAAACATGAACCCTCTACTGAAGCTGGTGTTGTTTCCAACATTGATGGAAGTTTACCTGGTGAAACAGAAGCTTTAGATTCTAGTGTTTCTGCTCAAGTTAACAGTGACACAGTTCTCAAGCCTGTAAATTTGGAACCACATTCTACATCATCTTACCATGATGCAAATGATGTAATCGTGACTGAATGTTCATCAAGTTTTTTGGGAACTGGAGACAACAACAATAATATTCATGAAAATGGTTATTCTGACAATCATGGAAAAGGATGTGTAAAAATCGGATATGAAAATGTTGATAATGTAAAATTTAATGATTTAGCAAGCAACCCTTTAGTTGGAAGTTATGAAACAAATTTTGATGAAACTCAAGAATTAAATTCAAGTTCATCAAAAATTGTTTCTGAAAAAGATGCTTTTGCAGTTGAGTTTGTTGATTCTGATGATGAGTCAGGTATGAGTCAGGTGCTTACTAAATCACAGGAAAAATGTAATACTGAATTTCTTGAGGAAATTATTGAAGAAGCTAAAAATAACAAGAAAATTCTTGGGGAGGCGATGGGTTCAGTCGTTGATCTTATTCGAGAAGTAGAATTTAAAGAAAAAGCTGCTGTGTCAGCAAAAGCAGAAGTTACTCGCGGTTGCTCAGATATTCTTGCCAAGGTGGACGAGGTTAAACAAGCACTTTTAAGGGCAAAAGAAGCAAATGATATGCATGCTGGAGAAGTTAATGCAGAGAAGGCAATTCTAACTACCGAATTGAAAGAAATGCAGCTTCGTTTATTCACTCTTTCAGACGAAAGAAACAAATCGCTTGGAATTCTTGATGAGATGCGTAAAGCTTTAGAAATTCGATTGGCTGCTGCTTTAGATGAAATCGCATCAGCAGAAGAACAAAAAATAGAAAACGAACGGGCTGCAAGAGAAGCTCTTATATATCAAGAAAGTCAAATGGAAAAAGTAGTTGAAGAGTCTAAAAAACTGAAGCTAGAAGCAGAGGAAAATTCAAAATTGCAAGAATTTCTCATGGATCGTGGCCATGCAATTGATATCTTACAGGGAGAGATTTCTGTCAAATGTCAAGATGTATTACTATTAAAAGAAAGGTTTGAGAAAAATATTCCACTTTCAAGATCACTTTCTTCCAGCCGAACAACCTCAATTTTATCTTCTTCAAGTTCATCTTCTAGAAGTGTAATCACACCCGTTGAGCCTGAATACGAATTCAAGAGTTATGAAAGTTTGATGAAAAGTGCAGAAATGAGTGATTCTTTTGATTTTCTTGACAAGAGTTTGATGTCAGATGTTGGTCATCAATCACACAAGTTTTCAGAAGAAATTGTAAATCCTGTTGATGATCATAAACTTCTTGAAGAAGATGGATGGGAGTTTTTTGAAAAATGA 1674 35.19 MGFSSVYKVLQEVFPQVDSRVLKAVAIEHSKDADVAVEVVLLEIIPQLPEKPKPSTVGSSSNSNIPLSFFEGGDEINQPKSTMDQLVINSYKHEPSTEAGVVSNIDGSLPGETEALDSSVSAQVNSDTVLKPVNLEPHSTSSYHDANDVIVTECSSSFLGTGDNNNNIHENGYSDNHGKGCVKIGYENVDNVKFNDLASNPLVGSYETNFDETQELNSSSSKIVSEKDAFAVEFVDSDDESGMSQVLTKSQEKCNTEFLEEIIEEAKNNKKILGEAMGSVVDLIREVEFKEKAAVSAKAEVTRGCSDILAKVDEVKQALLRAKEANDMHAGEVNAEKAILTTELKEMQLRLFTLSDERNKSLGILDEMRKALEIRLAAALDEIASAEEQKIENERAAREALIYQESQMEKVVEESKKLKLEAEENSKLQEFLMDRGHAIDILQGEISVKCQDVLLLKERFEKNIPLSRSLSSSRTTSILSSSSSSSRSVITPVEPEYEFKSYESLMKSAEMSDSFDFLDKSLMSDVGHQSHKFSEEIVNPVDDHKLLEEDGWEFFEK 557
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre1g04394 557 Coils Coil 369 396 - -
Stre1g04394 557 ProSiteProfiles CUE domain profile. 2 44 IPR003892 GO:0043130(InterPro)
Stre1g04394 557 CDD CUE 10 41 - -
Stre1g04394 557 PANTHER OS10G0315400 PROTEIN 1 557 - -
Stre1g04394 557 SUPERFAMILY UBA-like 4 41 IPR009060 GO:0005515(InterPro)
Stre1g04394 557 Coils Coil 249 276 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre1g04394 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
159172 Stre1g04394 Stre6g02397
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr1:130494272 Stre6g02388 Stre-Chr6:84039715 dispersed
Stre Stre-Chr1:130494272 Stre6g02397 Stre-Chr6:84201740 wgd
Stre Stre-Chr1:130494272 Stre6g02397 Stre-Chr6:84201740 wgd