AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre1g04407 ATGCTCAATATTTTCAACAAAAACCTCCGGCGACTCTGCTCAAAGTTCCGGTGGCCGGTGCGCCGCCGTGCAAAGCCTAAAGTCATCATCAAAAGATTTGGAAAATCAAATTCTAGAGGTCAAGATTCATTAAACACAAATGGGTCGGCCACAATTCACCCAAATAATCATTTGGGTATTTCAAAATCATCAAACCCAATTCGAATTGCAACATTTAATGCTGCTTTATTCTCAATGGCACCAGCAGTTCCAGAGTTGACCAAAAAAGCTTCAAGCTTTGACCATGGCGAAGATGAAGAAGATTACACAAAGGTCGCCTTAAATTCCCCTACTTCTTATACTAATTCACGATCAAAATCAATGGTTGATCGTCCCAAAAGCATATTAAAGCAATCACCATTACATTCAAGCTCCATCAGCAGTTCAGAAACCTTATCAAAACAACAGAAATTCGCAAAGTCAAAACTACGTGTATCGATAAATCTACCAGACAATGAAATTTCATTGAAACGAAGCGGTCGATTAAACTTTGTTCCAGACGAAACTGAACCCGACCCGAGTTTGAAACCCAGTAGTTCCAAGGGTATAAGCAGGATTTTGAAAGGAAAAGGTGTTTTAAGATCAAATAATAGTTTTTCTTCAAGAGAATTTGAAAGTCAAAGGGGAAATTACAGGTCAACGAAGACTGTTCTTGAAGTTTTGAAAGAATTGGATGCAGATATATTGGCTTTACAAGATGTAAAAGCTGAAGAAGAAAAAGATATGAAACCATTATCTGATTTGGCTGCTGCTTTGGGTATGAATTATGTGTTTGCTGAAAGTTGGGCACCCGAATATGGTAACGCGATTTTATCGAAGTGGCCGATTAAACGATCGAAAGTTCAGAAGATTTTCGATGATTCTGATTTCAGGAATGTTTTAAAGGCGACAATTGATGTTCCACAAACCGGAGAAGTTGACTTTCAATGTACTCTTCTTGATCATCTTGATGAAAATTGGCGAATGAAGCAAATTAATGCAATAATCGAATCAAATGAGAGACCACATATTTTAGCTGGAGGTATCAACTCACTTGATGAAACAGATTACTCGCCTGAAAGATGGACCGACATTGTTAAGTATTATGAAGAAATGGGAAAACCGACACCAAAAGTTGAAGTGATGAAGTATTTAAAAAGCAAACATTACACCGATGCTAAACATTTTGCAGGCGAATGCGAATCTGTAGTTATTATCGCGAAAGGACAAAATGTGCAAGGTACATGCAAATATGGTACTAGAGTAGATTATATATTGGTGTCACCAGAATCACCGTACAAGTTTGTTCCTGGTTCGTATATGGTTTTATCGTCAAAGGGTACTTCTGACCATCACATAGTCAAAGTTGAGGTAACTAAGGTTGCGGAATCTGGTCAACAACAAATCGTTAGAAGACATCGACATCCTAAACAAAAAGTTGTGAAGATAGCGAATTCTAATTCATCAAAAGGTGTATGGAGAATACAAACTTTAGATAGATAG 1521 37.54 MLNIFNKNLRRLCSKFRWPVRRRAKPKVIIKRFGKSNSRGQDSLNTNGSATIHPNNHLGISKSSNPIRIATFNAALFSMAPAVPELTKKASSFDHGEDEEDYTKVALNSPTSYTNSRSKSMVDRPKSILKQSPLHSSSISSSETLSKQQKFAKSKLRVSINLPDNEISLKRSGRLNFVPDETEPDPSLKPSSSKGISRILKGKGVLRSNNSFSSREFESQRGNYRSTKTVLEVLKELDADILALQDVKAEEEKDMKPLSDLAAALGMNYVFAESWAPEYGNAILSKWPIKRSKVQKIFDDSDFRNVLKATIDVPQTGEVDFQCTLLDHLDENWRMKQINAIIESNERPHILAGGINSLDETDYSPERWTDIVKYYEEMGKPTPKVEVMKYLKSKHYTDAKHFAGECESVVIIAKGQNVQGTCKYGTRVDYILVSPESPYKFVPGSYMVLSSKGTSDHHIVKVEVTKVAESGQQQIVRRHRHPKQKVVKIANSNSSKGVWRIQTLDR 506
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre1g04407 506 MobiDBLite consensus disorder prediction 105 122 - -
Stre1g04407 506 MobiDBLite consensus disorder prediction 176 195 - -
Stre1g04407 506 Gene3D Endonuclease-exonuclease-phosphatase 210 467 IPR036691 -
Stre1g04407 506 Coils Coil 234 254 - -
Stre1g04407 506 Pfam Endonuclease-Exonuclease-phosphatase family 221 457 IPR005135 GO:0003824(InterPro)
Stre1g04407 506 MobiDBLite consensus disorder prediction 90 104 - -
Stre1g04407 506 MobiDBLite consensus disorder prediction 90 146 - -
Stre1g04407 506 MobiDBLite consensus disorder prediction 130 146 - -
Stre1g04407 506 SUPERFAMILY DNase I-like 227 464 IPR036691 -
Stre1g04407 506 PANTHER CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR 12 463 IPR051916 GO:0005783(PANTHER)|GO:0006506(PANTHER)
Stre1g04407 506 MobiDBLite consensus disorder prediction 36 57 - -
Stre1g04407 506 FunFam Endonuclease-exonuclease-phosphatase family protein 215 467 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre1g04407 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr10:24992117 Stre1g04407 Stre-Chr1:130717357 dispersed