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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre1g04461 ATGTCACCGGAGGAGCCCGTGTCAGCACTCGAGAAACCGCTTCATCAGCTCACTGAAGACGACATTTCACAGCTAACTCGCGAAGATTGCCGCCGGTACCTCAAGCAAAAAGGGATGAGACGGCCGTCATGGAATAAATCACAGGCGATCCAGCAGGTGATTATGCTAAAAGCGTTACTAGAACCGTCGGCTGATTCCGATGACGGTGGCCGGAAACGCTGCATTAGTTCTCGGCGACAGCAAACCCCAGCCACTCGTGTCCAGAAAGGAACAAGTGCCGATACGGAGATCTCTCTTTCAGGTGAAGAATCAGTACCCTGTCATCGTAATGATACAGAGAAATCAGATTTTTTGGGTGATAATGATTCTGCTCCTCCAGGGATTGTTGGTGGGATAGAAGATTCAAAAGGACAAATGACAATATTTTACAGTGGCCATGTGAATGTATATGATGATGTCCCAGCTGATAAGGCACAGGCACTATTCCAGCTTGCTGCAAGCCCGTTACATTTTTCTCAAGACGATCCATTTGATAGAAACATGTTGCAACCTCAAAATATTAATGTGGGTCGAGATTTCCAACCTGTACTCGCGCCAGTCTTGCAGACAGTGAGAACAACAGACAATTATCGACTTCACAGAGAAGAAAGCAACATATCACGTGAAGATAACTCTGCTGAAGGTTCAGCAAGCAGAAAAGCATCAGTTCAACGATACCTAGAGAAACGAAAAGACAGGTATCATCAACTCTACCTGCAACAAATATTTACCAAATTATTTTATTTTCTTTTTTTTTTTTTTGGTTCTCATGTTCTTGTTAGGTGA 825 44.0 MSPEEPVSALEKPLHQLTEDDISQLTREDCRRYLKQKGMRRPSWNKSQAIQQVIMLKALLEPSADSDDGGRKRCISSRRQQTPATRVQKGTSADTEISLSGEESVPCHRNDTEKSDFLGDNDSAPPGIVGGIEDSKGQMTIFYSGHVNVYDDVPADKAQALFQLAASPLHFSQDDPFDRNMLQPQNINVGRDFQPVLAPVLQTVRTTDNYRLHREESNISREDNSAEGSASRKASVQRYLEKRKDRYHQLYLQQIFTKLFYFLFFFFGSHVLVR 274
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre1g04461 274 MobiDBLite consensus disorder prediction 76 99 - -
Stre1g04461 274 Pfam tify domain 135 166 IPR010399 -
Stre1g04461 274 ProSiteProfiles Tify domain profile. 132 167 IPR010399 -
Stre1g04461 274 Pfam Jas motif 232 246 IPR018467 -
Stre1g04461 274 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 18 247 IPR040390 GO:0005634(PANTHER)|GO:0009611(PANTHER)|GO:0031347(PANTHER)|GO:2000022(PANTHER)
Stre1g04461 274 MobiDBLite consensus disorder prediction 1 23 - -
Stre1g04461 274 SMART tify-2 132 167 IPR010399 -
Stre1g04461 274 MobiDBLite consensus disorder prediction 64 131 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre1g04461 K13464 jasmonate ZIM domain-containing protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr1:131863088 Stre2g00099 Stre-Chr2:1952043 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Stre9g00886 ACH,WGDA 119 252 Tify gene family AT1G19180 35.075 1.59e-22 87.0
Stre9g03088 WGDA 18 268 Tify gene family AT3G21175 57.588 2.81e-88 266.0
Stre9g00533 WGDA 4 192 Tify gene family AT5G13220 41.27 4.83e-34 117.0
Stre1g04461 . 10 250 Tify gene family AT4G14720 41.634 1.25e-49 164.0
Stre10g03017 WGDA 27 265 Tify gene family AT4G32570 41.985 2.47e-43 150.0
Stre11g02218 . 3 128 Tify gene family AT1G30135 43.382 2.60e-21 81.3
Stre11g02225 WGDA 3 128 Tify gene family AT1G30135 42.647 2.39e-20 78.6
Stre11g02467 ACH 1 236 Tify gene family AT1G19180 34.553 1.16e-27 103.0
Stre11g02398 ACH,WGDA 1 236 Tify gene family AT1G19180 34.553 1.65e-28 106.0
Stre4g02778 ACH,WGDA 13 212 Tify gene family AT1G17380 30.846 2.46e-18 77.8
Stre4g02779 ACH 1 212 Tify gene family AT1G72450 30.189 5.24e-18 77.0
Stre2g00099 ACH 144 292 Tify gene family AT1G48500 42.282 9.90e-22 88.6
Stre2g05349 ACH,WGDA 17 227 Tify gene family AT1G19180 28.704 9.78e-19 80.1
Stre2g02648 ACH 18 232 Tify gene family AT1G19180 33.333 5.67e-26 99.4
Stre2g00683 WGDA 1 193 Tify gene family AT5G13220 36.082 1.26e-23 90.9
Stre8g02881 ACH,WGDA 1 332 Tify gene family AT3G17860 33.14 2.39e-28 110.0
Stre8g02723 . 17 192 Tify gene family AT5G13220 34.615 7.77e-20 79.7
Stre8g02715 . 38 187 Tify gene family AT5G13220 33.333 2.66e-15 67.8
Stre5g00323 WGDA 1 332 Tify gene family AT3G17860 33.433 7.49e-34 125.0
Stre5g02644 WGDA 18 301 Tify gene family AT1G51600 50.508 1.41e-84 256.0
Stre5g02939 ACH,WGDA 19 236 Tify gene family AT1G19180 31.982 2.82e-23 92.4
Stre5g02940 ACH 1 228 Tify gene family AT1G19180 34.188 9.56e-27 101.0
Stre5g01590 WGDA 27 265 Tify gene family AT4G32570 39.333 1.21e-40 145.0
Stre7g00774 . 71 267 Tify gene family AT4G24470 51.724 2.54e-63 199.0
Stre7g00231 . 119 238 Tify gene family AT1G70700 42.5 1.25e-15 69.7
Stre6g02802 WGDA 3 127 Tify gene family AT1G30135 40.741 7.47e-21 79.7
Stre6g02063 ACH,WGDA 1 251 Tify gene family AT1G19180 34.749 6.96e-37 127.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Stre tify 5.7e-15 No_clan TF Tify