AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre1g04463 ATGAATCCATTTTATTCAGTCGTAAAGGAAGAATACCCATCTACCGGTGACGGTGGTGGCAGCAGCGGCGGCGGCGGTGGTCAGAGGGTGGATCAATTAATAATGGGTCAAGCTCCACAACCAATGGAAGGTCTTCATGATTCTGGTCCACCACCATTTTTGACAAAAATCTATGATATGGTGAATGATGAAACAATTGATCATATAATTTGTTGGAGCAGAGGAGGTCAAAGTTTTGTTGTTTCAGATCCAAATGCTTTTTCAACTAATCTTCTTCCAAGATACTTCAAACACAACAATTTCTCTAGTTTTGTGAGACAACTTAATACTTATGGATTTAGAAAGATTGATACTGAAACATGGGAATTTGCTAACGAAGCATTCGTTAGAGGCCGACGACATGTTTTAAAAAACATCAAAAGAAGACGAACACCAAATTCTCAATCTTCATCTCCACAACATAATCAAACTCCTGTTATTGAAACTGGAAAATCAAACTCAGATGAAGTTGGTCATTTAAAACAAGAAAAACAGGTTCTTATGATGGAATTAGTGAAACTTAAACAACAGCAACAAATAACGCGAGCCCAATTGCACGCGATGGAGCTTAGATTGCAAGGAACCGAGAAAAAACAACAAAAGATGATGAATTTCTTGGCAAAAGCTATGCAGAATCCCGATTTTGTGCAGAAATTGGTTCTTCATGGTAAAAACAAAGAGTTTCAAGAAGCCATCAAGAACCAGATTGGTGAATCGAGTCAAACGTGTCGTGGGTCTAAACTCATTAAATCCGAACCAGATGAATTTATGGATCATTCGTCGTTTCAATTATCTGAACTTGAAGCACTTGCTTTAGAAATTCAAGGGTTTGGTAGATTGAAAAGAAATCAAGAACAAGAACAAGAAAGTAAGGATCTTGAATTTGATATTGGAGTGAAAGAACTTGATGATGAATTTTGGGAAGAATTGTTTAGTGTGAGATCTGATGAACAATCTGCAGATGATGTGAGTTTCTTGGCTGATAAGTTGGATTTCTTGGGCTCAAGCCCAACTTAA 1056 37.41 MNPFYSVVKEEYPSTGDGGGSSGGGGGQRVDQLIMGQAPQPMEGLHDSGPPPFLTKIYDMVNDETIDHIICWSRGGQSFVVSDPNAFSTNLLPRYFKHNNFSSFVRQLNTYGFRKIDTETWEFANEAFVRGRRHVLKNIKRRRTPNSQSSSPQHNQTPVIETGKSNSDEVGHLKQEKQVLMMELVKLKQQQQITRAQLHAMELRLQGTEKKQQKMMNFLAKAMQNPDFVQKLVLHGKNKEFQEAIKNQIGESSQTCRGSKLIKSEPDEFMDHSSFQLSELEALALEIQGFGRLKRNQEQEQESKDLEFDIGVKELDDEFWEELFSVRSDEQSADDVSFLADKLDFLGSSPT 351
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre1g04463 351 MobiDBLite consensus disorder prediction 138 168 - -
Stre1g04463 351 SMART hsfneu3 49 142 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Stre1g04463 351 Pfam HSF-type DNA-binding 53 142 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Stre1g04463 351 FunFam Heat shock transcription factor 1 46 143 - -
Stre1g04463 351 MobiDBLite consensus disorder prediction 11 31 - -
Stre1g04463 351 MobiDBLite consensus disorder prediction 142 164 - -
Stre1g04463 351 Gene3D - 45 143 IPR036388 -
Stre1g04463 351 PRINTS Heat shock factor (HSF) domain signature 91 103 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Stre1g04463 351 PRINTS Heat shock factor (HSF) domain signature 104 116 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Stre1g04463 351 PRINTS Heat shock factor (HSF) domain signature 53 76 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Stre1g04463 351 Coils Coil 170 190 - -
Stre1g04463 351 ProSitePatterns HSF-type DNA-binding domain signature. 92 116 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Stre1g04463 351 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 40 333 IPR027725 GO:0000978(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0034605(PANTHER)
Stre1g04463 351 SUPERFAMILY Winged helix DNA-binding domain 48 142 IPR036390 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre1g04463 K09419 heat shock transcription factor, other eukaryote
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr1:131909125 Stre2g04134 Stre-Chr2:147494622 dispersed
Stre Stre-Chr1:131909125 Stre3g00931 Stre-Chr3:12411604 transposed
leaf

Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Stre9g00051 . 1 262 Heat shock transcription factors Hsfs gene family AT5G62020 47.955 9.97e-76 230.0
Stre9g00793 . 4 477 Heat shock transcription factors Hsfs gene family AT1G32330 48.413 4.54e-134 394.0
Stre9g02367 . 1 343 Heat shock transcription factors Hsfs gene family AT1G46264 54.891 2.78e-114 333.0
Stre9g02886 . 25 141 Heat shock transcription factors Hsfs gene family AT3G24520 58.73 2.40e-46 152.0
Stre9g02045 . 1 344 Heat shock transcription factors Hsfs gene family AT5G45710 41.463 1.07e-81 250.0
Stre1g02017 . 24 466 Heat shock transcription factors Hsfs gene family AT4G13980 51.91 1.32e-134 394.0
Stre1g00071 . 4 268 Heat shock transcription factors Hsfs gene family AT5G62020 53.147 3.64e-85 256.0
Stre1g04745 . 17 110 Heat shock transcription factors Hsfs gene family AT1G67970 50.0 5.00e-24 102.0
Stre1g00003 . 17 110 Heat shock transcription factors Hsfs gene family AT1G67970 50.0 5.48e-24 102.0
Stre1g04463 . 19 264 Heat shock transcription factors Hsfs gene family AT3G51910 51.408 5.71e-90 269.0
Stre1g03804 . 41 369 Heat shock transcription factors Hsfs gene family AT5G03720 42.033 4.67e-86 265.0
Stre1g04743 . 17 79 Heat shock transcription factors Hsfs gene family AT1G67970 46.032 7.67e-12 63.5
Stre1g00004 . 17 79 Heat shock transcription factors Hsfs gene family AT1G67970 46.032 6.62e-12 63.2
Stre10g02193 . 6 290 Heat shock transcription factors Hsfs gene family AT1G32330 60.702 1.62e-113 340.0
Stre10g02824 . 6 392 Heat shock transcription factors Hsfs gene family AT5G03720 42.416 1.21e-82 256.0
Stre11g02969 . 14 197 Heat shock transcription factors Hsfs gene family AT3G24520 59.585 8.54e-78 236.0
Stre11g00530 . 1 343 Heat shock transcription factors Hsfs gene family AT5G45710 42.933 1.42e-85 261.0
Stre11g00500 . 180 400 Heat shock transcription factors Hsfs gene family AT4G18880 29.825 8.29e-22 89.7
Stre11g03016 . 14 197 Heat shock transcription factors Hsfs gene family AT3G24520 59.585 8.54e-78 236.0
Stre4g01290 . 51 152 Heat shock transcription factors Hsfs gene family AT4G11660 71.569 1.36e-49 160.0
Stre4g00522 . 6 401 Heat shock transcription factors Hsfs gene family AT4G18880 44.039 4.36e-87 267.0
Stre4g01733 . 9 284 Heat shock transcription factors Hsfs gene family AT4G36990 51.203 4.27e-83 249.0
Stre4g02043 . 1 343 Heat shock transcription factors Hsfs gene family AT1G46264 49.219 3.28e-103 305.0
Stre4g01306 . 51 152 Heat shock transcription factors Hsfs gene family AT4G11660 71.569 4.02e-49 159.0
Stre4g00556 . 6 401 Heat shock transcription factors Hsfs gene family AT4G18880 43.689 1.12e-85 264.0
Stre2g04134 . 13 343 Heat shock transcription factors Hsfs gene family AT2G26150 52.066 4.56e-112 329.0
Stre2g04614 . 8 273 Heat shock transcription factors Hsfs gene family AT4G36990 50.0 3.17e-71 219.0
Stre2g04612 . 8 273 Heat shock transcription factors Hsfs gene family AT4G36990 50.0 3.17e-71 219.0
Stre2g00954 . 6 474 Heat shock transcription factors Hsfs gene family AT1G32330 48.571 1.65e-130 385.0
Stre8g03092 . 17 299 Heat shock transcription factors Hsfs gene family AT1G67970 43.092 7.67e-70 220.0
Stre8g01808 . 11 264 Heat shock transcription factors Hsfs gene family AT5G62020 53.069 7.49e-86 259.0
Stre8g01262 . 38 244 Heat shock transcription factors Hsfs gene family AT2G41690 52.885 2.95e-64 198.0
Stre3g00315 . 15 108 Heat shock transcription factors Hsfs gene family AT3G24520 45.745 4.07e-24 100.0
Stre3g01935 . 15 354 Heat shock transcription factors Hsfs gene family AT5G03720 45.773 8.14e-88 269.0
Stre3g00931 . 31 343 Heat shock transcription factors Hsfs gene family AT2G26150 53.03 2.63e-109 321.0
Stre5g03284 . 25 192 Heat shock transcription factors Hsfs gene family AT3G24520 54.023 3.90e-58 186.0
Stre7g02337 . 2 267 Heat shock transcription factors Hsfs gene family AT5G62020 52.685 8.46e-95 282.0
Stre7g00521 . 1 397 Heat shock transcription factors Hsfs gene family AT4G18880 41.584 6.79e-87 267.0
Stre6g01522 . 19 194 Heat shock transcription factors Hsfs gene family AT3G51910 25.926 3.00e-15 71.2
Stre6g02727 . 1 344 Heat shock transcription factors Hsfs gene family AT5G45710 33.333 1.07e-47 161.0
Stre6g01526 . 19 194 Heat shock transcription factors Hsfs gene family AT3G51910 32.804 1.97e-28 107.0
Stre6g01346 . 14 200 Heat shock transcription factors Hsfs gene family AT3G24520 57.143 6.51e-71 219.0
Stre6g02412 . 198 376 Heat shock transcription factors Hsfs gene family AT3G22830 42.458 6.19e-29 107.0
leaf

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Stre HSF_DNA-bind 6.2e-33 CL0123 TF HSF