AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre1g04466 ATGGGGACTGAAAATCCTAACCGTGCAAATAATTATCAAGGAACTGCTGCTACTCCTTTTGCAGCTCCTCAAACCAACATGCCCGCTTCTGTATCTCGGCCCATGTCACAACCCCCTGCTTTCAGGCCCGCATCAGTTCCTGCAATGCCAAACGCATCTCCATTTTCTTCTCCTGGGCCCACAACTGGATCAGGGGCTCCTGGTTTCAGGCCCATGCAACCAGGTAGGCCCACTACTCCATTTGGCCCACCAACTACCGCACCTCTCCAACGGTTCCCAACTCCACAATTTCCCTCAACACCTCAACCACCCATGTCACAAACCGCAAATTTGGGCAAGCCTATTTTGCCTCCACCAATGAGACCACCTCCTCCTAATGTTCCACCTCAAAACTTATACAGTGTTTCTAATAATAATAATAATCCTCCAAGGTCATTTGTAGATTCACCATTTTCTTCTTCTGGACCAAACGTCCAGCAACCGCCATCTTCCACCAGACCGCCTTACCCTGGCTATCCAGGTATACAGAGTAATCCAGTTACTCAACCACCGTCAGCACAGCCAGCTTATCATCAAGGCAGCGGTTATGCTCCACCTCAGCCCGCCATGCCTGCTCCTTTTTCTTCTCATCAAGGTGGTTATGGACAAGTTCCGCCAGGTGCATCACCAACAGGAATGTATCCTGGTGGCACCGCACCGCCAACGGGAGTTATGCCAGGTTTGGTGGAAGATTTCAGCTCACTTACTTTAGGGTCTACTCCTGGATCTTTTGATGGTGGGCTTGATGTTAAGGCGTTGCCACGACCATTGGATGGTGATGTGGAACCAAGTTCTTTTGCTGGAATGTATCCGATGAATTGTGATTCTAGATATTTAAGACTTACTACTAGTGCGATACCAAATTCGCAGTCTTTGGTTTCCAGGTGGCAGTTACCTCTTGGAGCAGTTGTTTGTCCATTGGCAGAAACTCCTGAGGGGGAGGAAGTACCGATAGTTAATTTTGCCACAATGGGTATCGTTCGTTGTAGAAGATGTCGTACGTATGTGAATCCGTATGTGACTTTTACAGATGGTGGAAGAAAGTGGAGGTGCAATATTTGTGCTTTACTAAATGATGTGCAAAATGATTATTTCGCTCATTTGGATGCCACTGGAAGAAGAGTTGATCTTGATCAACACCCCGAGCTTACAAAGGGTTCTGTAGAATTCGTTGCTCCAACTGAATACATGGTCCGACCTCCAATGCCACCATCATACTTTTTTATGATCGATGTATCAATATCGGCAGTGAAAAGTGGAATGCTTGAGGTGATGGCACAAACTATTAAATCTTGTTTGGATAGACTACCTGGCAACCCCAGAACACAAATTGGGTTTATAACTTATGACAGCACAATTCACTTCTACAACATGAAGTCATCTTTGACGCAGCCGCAAATGATGGTGGTATCAGATTTGGATGATATTTTTGTTCCATTGCCAGATGATCTACTTGTCAACCTGTCAGAATCCAGAACTGTTGTGGAGGCATTTCTAGATAGTTTGCCTTCTATGTTTCAGGACAATGTTAATGTGGAATCTGCTTTTGGACCCGCTCTTAAAGCAGCTTTTATGGTTATGAACCAACTTGGAGGGAAATTATTAATTTTTCAGAGCACACTTCCCTCACTTGGTGTCGGTCGTTTAAAGTTGCGTGGAGACGATCTTCGTGTTTATGGAACTGATAAAGAACATACTTTAAGAATACCAGAAGACCCGTTTTATAAACAAATGGCTGCTGATTTTACCAAATTCCAAGTTGCAGTGAATATTTATGCATTTAGTGACAAATATACTGACATAGCCTCATTAGGTACTTTAGCAAAATACACTGGTGGCCAGGTATATTATTATCCAAGTTTTCATTCAGCGATTCACAAAGACAAGTTGAGACATGAGCTGGCAAGAGATCTCACTAGAGAAACTGCGTGGGAAGCTGTAATGCGTATCAGATGTGGAAAAGGAGTGCGCTTCACCTCGTATCATGGGAACTTTATGCTAAGATCCACGGATCTATTAGCACTCCCAGCTGTTGACTGTGATAAAGCTTATGCGATGCAGTTTGCTCTTGAGGAGACATTGCTTACAACTCAGATTGTGTATTTCCAAGTTGCGTTACTATACACTGCGTCTTGCGGTGAAAGGCGTATCAGAGTACACACCGCTGCAGCATCAGTGGTTGCAGAGTTAGGAGAGATGTACCGACAGGCGGATACTGGTGCTGTTGTTTCCTTGCTTGGTAGATTAGCAATTGAGAAATCTTTATCATATAAACTGGAAGAGGCTCGAAATGCAGTTCAACAAAAAATCGTTAAAGCCCTAAAAGAATACCGAAAACTATATTCAGTGCAGCATCGCGTAGGAAGCAGGATGATCTACCCAGAATCACTCAAATATTTACCCTTATATGGATTATCACTATGCAAATCAACCGCACTTCGCGGTGGTTATGCGGATGCACAACTTGATGAACGATGTGCTGCAGGCTTCACCATGATGGCTTTACCTGTTAAAAAAATGTTAAAGCTTTTATATCCTAGCTTGTTAAGAGTAGACGAGTATCTTGTCAAGACACCTACGACGGATGATGAATTTAGCAGAGTTTGTAAAAGGCTGCCACTTGTTGCTGAAAACTTAGATTCTAGAGGAATATATATATTTGATGACGGTTTTCGTATTGTGGTGTGGTTTGGTCGCATGCTTTCACCAGATTTAGCCAGGAATCTAGTTGAGGAAGATTCAGCTACAGATTTCTCACGGAATCAGGTATGTTTGAGCGAACGCAACAATGAAATGTCAAGAAAGCTGATGAGGATAATAAACAAACTTAGAGAGGCTGATAACTCATATTATCAATTATGTCATCTTGTGAGACAAGGCGAACAACCTCGCGAAGGTTTCTTTTTACTCTTGAATTTAGTTGAGGATCAGGTTGGTGGTATGAGCGGTTATGCTGATTGGATGCTTCAGATACATCGTCAAGTACAACAATAA 3033 43.26 MGTENPNRANNYQGTAATPFAAPQTNMPASVSRPMSQPPAFRPASVPAMPNASPFSSPGPTTGSGAPGFRPMQPGRPTTPFGPPTTAPLQRFPTPQFPSTPQPPMSQTANLGKPILPPPMRPPPPNVPPQNLYSVSNNNNNPPRSFVDSPFSSSGPNVQQPPSSTRPPYPGYPGIQSNPVTQPPSAQPAYHQGSGYAPPQPAMPAPFSSHQGGYGQVPPGASPTGMYPGGTAPPTGVMPGLVEDFSSLTLGSTPGSFDGGLDVKALPRPLDGDVEPSSFAGMYPMNCDSRYLRLTTSAIPNSQSLVSRWQLPLGAVVCPLAETPEGEEVPIVNFATMGIVRCRRCRTYVNPYVTFTDGGRKWRCNICALLNDVQNDYFAHLDATGRRVDLDQHPELTKGSVEFVAPTEYMVRPPMPPSYFFMIDVSISAVKSGMLEVMAQTIKSCLDRLPGNPRTQIGFITYDSTIHFYNMKSSLTQPQMMVVSDLDDIFVPLPDDLLVNLSESRTVVEAFLDSLPSMFQDNVNVESAFGPALKAAFMVMNQLGGKLLIFQSTLPSLGVGRLKLRGDDLRVYGTDKEHTLRIPEDPFYKQMAADFTKFQVAVNIYAFSDKYTDIASLGTLAKYTGGQVYYYPSFHSAIHKDKLRHELARDLTRETAWEAVMRIRCGKGVRFTSYHGNFMLRSTDLLALPAVDCDKAYAMQFALEETLLTTQIVYFQVALLYTASCGERRIRVHTAAASVVAELGEMYRQADTGAVVSLLGRLAIEKSLSYKLEEARNAVQQKIVKALKEYRKLYSVQHRVGSRMIYPESLKYLPLYGLSLCKSTALRGGYADAQLDERCAAGFTMMALPVKKMLKLLYPSLLRVDEYLVKTPTTDDEFSRVCKRLPLVAENLDSRGIYIFDDGFRIVVWFGRMLSPDLARNLVEEDSATDFSRNQVCLSERNNEMSRKLMRIINKLREADNSYYQLCHLVRQGEQPREGFFLLLNLVEDQVGGMSGYADWMLQIHRQVQQ 1010
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre1g04466 1010 Pfam Gelsolin repeat 886 932 IPR007123 -
Stre1g04466 1010 Pfam Sec23-Sec24 zinc finger 339 377 IPR006895 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0008270(InterPro)|GO:0030127(InterPro)
Stre1g04466 1010 MobiDBLite consensus disorder prediction 1 33 - -
Stre1g04466 1010 SUPERFAMILY vWA-like 414 653 IPR036465 -
Stre1g04466 1010 MobiDBLite consensus disorder prediction 1 240 - -
Stre1g04466 1010 Coils Coil 942 962 - -
Stre1g04466 1010 Gene3D Sec23-Sec24 helical domain 740 1008 - -
Stre1g04466 1010 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23-24 874 1010 IPR036180 -
Stre1g04466 1010 FunFam protein transport protein Sec24D isoform X1 416 653 - -
Stre1g04466 1010 Gene3D - 287 739 - -
Stre1g04466 1010 Pfam Sec23-Sec24 beta-sandwich domain 656 739 IPR012990 -
Stre1g04466 1010 Gene3D Severin 859 989 IPR029006 -
Stre1g04466 1010 MobiDBLite consensus disorder prediction 73 102 - -
Stre1g04466 1010 Pfam Sec23-Sec24 helical domain 751 854 IPR006900 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
Stre1g04466 1010 SUPERFAMILY Helical domain of Sec23-24 751 858 IPR036175 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
Stre1g04466 1010 MobiDBLite consensus disorder prediction 175 189 - -
Stre1g04466 1010 CDD Sec24-like 414 655 IPR041742 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
Stre1g04466 1010 MobiDBLite consensus disorder prediction 115 130 - -
Stre1g04466 1010 Pfam Sec23-Sec24 trunk domain 414 650 IPR006896 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
Stre1g04466 1010 Gene3D - 286 398 - -
Stre1g04466 1010 SUPERFAMILY beta-sandwich domain of Sec23-24 167 749 - -
Stre1g04466 1010 MobiDBLite consensus disorder prediction 131 160 - -
Stre1g04466 1010 Gene3D von Willebrand factor, type A domain 416 653 IPR036465 -
Stre1g04466 1010 PANTHER SEC24-RELATED PROTEIN 30 1010 IPR050550 GO:0000149(PANTHER)|GO:0008270(PANTHER)|GO:0030127(PANTHER)|GO:0070971(PANTHER)|GO:0090110(PANTHER)
Stre1g04466 1010 SUPERFAMILY Zn-finger domain of Sec23-24 328 413 IPR036174 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0008270(InterPro)|GO:0030127(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre1g04466 K14007 protein transport protein SEC24
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr1:132044373 Stre6g02103 Stre-Chr6:79711303 dispersed
Stre Stre-Chr1:132044373 Stre9g00863 Stre-Chr9:14120771 transposed