AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre1g04478 ATGATTATTTGGTTCAGATCAATGTCGAAGAATTTGCGGTTGATCGGTTTCTTGTTTATAATCTTAAACTTATCCCCTTTTGGGGAGTTTGCGATTGATGATTTTAATCAAGCATTTCCAATCATAGAACCCGATCCTGGTCATACAAAACTTCGCCTTTCTAGTGAAGGATTGGAAGCTATTAGGAGAATAACTAATCCTGTTGCAGCTGTTGCTGTAATTGGTCCATATCGATCTGGAAAATCTTTTCTGCTTAATCAACTTCTTTCACTTTCTTGTTATAAAGGGTTTGGTGTTGGCCATATGCGTGACACTAAAACAAAAGGAATATGGGTATGGGGAACTCCAGTTGAAATGGATATTGATGGAGTGAAAACGTCTGTATTTTATCTCGATACCGAAGGATTTGAAAGCATAGGGAAATCAAATGTTTATGATGACAGGATATTTGCTCTTGCTACGGTTTTGAGTTCTGTCCTTATTTATAATTTGCCCGAGACGATACGTGAAGCTGATATATCGCGCTTATCATTTGCTGTTGAGCTTGCTGAAGAGTTTTATGGAAGAGTCAAGGGCCAAGATGTTGCATTTGAACCAGCAAAACTATTGTGGCTGATACAACGTGACTTTTTACAGGGAAAATCTGTAAAAGAAATGGTTGATGAAGCTCTACGACATGTTCCTAACTCTGATGGTGACAAAAATATTGATCAGGTCAACCAGATACGCGACTCTCTAGCTATTATGGGTGACAATAGCACCGCTTTCAGCTTACCACAACCACATTTACAAAGGACGAAACTTTGTGACTTGAAAGATGGAGAGCTTGATCAGAGTTATGTTGAAAAGAGAGAACAGTTGAAAGAAGTAGTTAAATCTGTTATTCGTCCAAAGATCGTTCAGGGAAAATCACTTAATGGAAATGAATTTGTAGCTTTTCTTGAAAAGATTTTGGAAGCTTTGAATAAGGGTGAGATTCCATCCACAGGGTCTCTAGTTGAGGTATTTAACAAGAAAATATTAGAAAGATGTTTGAAGTTATACGAGGATAGTATGACAAAAGTAGATTTACCAATCTCTGAGGAATCTTTACAATCCATCCATGAAGCTTCTAGAACCGAATCCTTGAAATCTTTTGATGAACAACATTTTGGTCGTCATCATGCTAAAAAATCAGTTGAAACACTTGAAGAAGATATTGAAAAGATGTTTAAGAATTTTGTGATGGCAAACCAATATCAATCATCAAAATTATGTGAGGAGCACTATACAATGTGTGAGGACAAAATGGACCAACTTCAAGTACTCAGATTACCATCAATGGCTAAATTCAATGCGGGTTTTCTTCAATGCAATCAAACTTTTGAAGAAATGTGTGTTGGGCCTTCTAAAACCATATATGAGCAACGAATGGTGAAGATGATGGGAAAGTCAAAGTCTTTGTTTATAAAGGAATATAATCACAGATTATTCAACTGGTTGGTGGCTTTTTCACTTGTAATGGTGATCGTGGGTCGTTTTATTATAAAATTCATTTTGCTTGAAATCGGCGCGTGGATACTTTTTATATTTTTGGAGACATACACACGGATGTTTTGGTCACCCGAATCTCTTTATTACAATCCCGTTTGGCATGGCATTGTAGCAACTTGGGAAACACTCGTTTACAGCCCGATTCTTGATTTAGACAGATGGGCGATACAAATCGGATTCATTGCAATAATATTGTTATTTTACTGGCGATGTATTGGAAGAAGAAAACGCGGGTCCCATTCATTGTTACCGTTGTATGCCAGCAGTTCAAAAGTTCGGGATAGATCAGAGTAA 1827 37.11 MIIWFRSMSKNLRLIGFLFIILNLSPFGEFAIDDFNQAFPIIEPDPGHTKLRLSSEGLEAIRRITNPVAAVAVIGPYRSGKSFLLNQLLSLSCYKGFGVGHMRDTKTKGIWVWGTPVEMDIDGVKTSVFYLDTEGFESIGKSNVYDDRIFALATVLSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLLWLIQRDFLQGKSVKEMVDEALRHVPNSDGDKNIDQVNQIRDSLAIMGDNSTAFSLPQPHLQRTKLCDLKDGELDQSYVEKREQLKEVVKSVIRPKIVQGKSLNGNEFVAFLEKILEALNKGEIPSTGSLVEVFNKKILERCLKLYEDSMTKVDLPISEESLQSIHEASRTESLKSFDEQHFGRHHAKKSVETLEEDIEKMFKNFVMANQYQSSKLCEEHYTMCEDKMDQLQVLRLPSMAKFNAGFLQCNQTFEEMCVGPSKTIYEQRMVKMMGKSKSLFIKEYNHRLFNWLVAFSLVMVIVGRFIIKFILLEIGAWILFIFLETYTRMFWSPESLYYNPVWHGIVATWETLVYSPILDLDRWAIQIGFIAIILLFYWRCIGRRKRGSHSLLPLYASSSKVRDRSE 608
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre1g04478 608 FunFam Guanylate-binding family protein 33 301 - -
Stre1g04478 608 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 298 IPR027417 -
Stre1g04478 608 FunFam Guanylate-binding family protein 302 434 - -
Stre1g04478 608 ProSiteProfiles GB1-RHD3-type guanine nucleotide-binding (G) domain profile. 65 185 IPR030386 GO:0005525(InterPro)
Stre1g04478 608 Gene3D - 33 301 IPR027417 -
Stre1g04478 608 Pfam Guanylate-binding protein, N-terminal domain 50 288 IPR015894 GO:0003924(InterPro)|GO:0005525(InterPro)
Stre1g04478 608 Coils Coil 386 406 - -
Stre1g04478 608 SUPERFAMILY Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 301 522 IPR036543 GO:0003924(InterPro)|GO:0005525(InterPro)
Stre1g04478 608 Pfam Guanylate-binding protein, C-terminal domain 302 424 IPR003191 GO:0003924(InterPro)|GO:0005525(InterPro)
Stre1g04478 608 Gene3D - 302 435 - -
Stre1g04478 608 CDD GBP 62 291 - -
Stre1g04478 608 PANTHER GUANYLATE BINDING PROTEIN 38 559 - GO:0003924(PANTHER)|GO:0005525(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre1g04478 - -