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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre1g04482 ATGGACCAAAACAGAAGCACTCTCGATCTTTTCAACACTGATCTGGCAACCGAACTCAGATTAGGTTTACCGGGAACCGATGATCAGCCGGAGATAAAAAGCAGTCTTTCCGGCAACAAAAGATGCTCATCGGAGATGGGTTCAAGCACCACCACCGATGAACAGGAATCAACATTTTCACCACCCACCAAGGAACAAGTTGTTGGGTGGCCGCCGGTGAGATCTTACCGGAAAAACATACTTCAGGTGAAGAAACCGGAGTCTGAAACGGGTTCGGGTATGTATGTGAAAGTGAGCATGGATGGAGCTCCATATTTGAGGAAACTGGATCTTAAAGTTTACAGAAGCTATGAAGAACTGATGAAGAGTTTGCAAGACATGTTTAAGTGCATCATCGGGTTGTACTCTGAGAAAGAAGGGTACAATGGATCAAAGCATGTTCCAACTTATGAAGATAAAGATGGAGATTGGATGCTTGTTGGAGATGTACCATGGGAGATGTTCATAAATACTTGTAAAAGACTTAGAATTATGAAGAGTTGTGAATCCAGAGGGTTTGGTGCTTGTGTCTAA 573 43.28 MDQNRSTLDLFNTDLATELRLGLPGTDDQPEIKSSLSGNKRCSSEMGSSTTTDEQESTFSPPTKEQVVGWPPVRSYRKNILQVKKPESETGSGMYVKVSMDGAPYLRKLDLKVYRSYEELMKSLQDMFKCIIGLYSEKEGYNGSKHVPTYEDKDGDWMLVGDVPWEMFINTCKRLRIMKSCESRGFGACV 190
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre1g04482 190 MobiDBLite consensus disorder prediction 21 68 - -
Stre1g04482 190 MobiDBLite consensus disorder prediction 30 64 - -
Stre1g04482 190 ProSiteProfiles PB1 domain profile. 93 180 IPR053793 -
Stre1g04482 190 Gene3D - 88 190 - -
Stre1g04482 190 Pfam AUX-IAA family 16 186 IPR033389 -
Stre1g04482 190 SUPERFAMILY CAD & PB1 domains 88 179 - -
Stre1g04482 190 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 183 IPR003311 GO:0005634(InterPro)|GO:0006355(InterPro)
Stre1g04482 190 FunFam Auxin-responsive protein 88 190 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre1g04482 K14484 auxin-responsive protein IAA
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Event-related genes

Select Gene_1 Gene_2 Event_name
159196 Stre1g04482 Stre6g02339
159197 Stre1g04482 Stre8g00421
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr1:132435423 Stre6g01339 Stre-Chr6:61672588 dispersed
Stre Stre-Chr1:101328538 Stre1g04482 Stre-Chr1:132435423 wgd
Stre Stre-Chr1:132435423 Stre6g02339 Stre-Chr6:83322209 wgd
Stre Stre-Chr1:132435423 Stre8g00421 Stre-Chr8:8756376 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Stre1g04482 ACH 14 174 IAA gene family AT3G23030 56.742 3.69e-62 189.0
Stre1g02793 ACH,WGDA 44 230 IAA gene family AT2G33310 50.711 1.15e-56 181.0
Stre1g02729 . 1 236 IAA gene family AT3G04730 61.29 6.98e-98 284.0
Stre1g02727 ACH,WGDA 9 167 IAA gene family AT3G23030 55.429 1.67e-59 181.0
Stre10g00110 . 1 227 IAA gene family AT4G14550 71.429 4.21e-114 324.0
Stre10g01858 . 37 252 IAA gene family AT1G51950 50.0 1.15e-59 186.0
Stre10g01969 . 37 252 IAA gene family AT1G51950 50.0 2.11e-59 186.0
Stre10g00180 WGDA 1 228 IAA gene family AT4G14550 69.835 2.23e-112 320.0
Stre10g01479 . 27 149 IAA gene family AT3G17600 34.375 3.52e-16 69.3
Stre11g02693 . 131 222 IAA gene family AT2G33310 27.174 1.60e-09 53.1
Stre11g01802 . 125 227 IAA gene family AT2G33310 45.631 2.70e-21 87.0
Stre11g02322 ACH 14 151 IAA gene family AT3G23030 43.046 7.13e-28 100.0
Stre4g02610 . 5 225 IAA gene family AT1G04250 44.344 3.13e-55 173.0
Stre4g02611 ACH,WGDA 2 219 IAA gene family AT3G04730 38.182 1.65e-34 119.0
Stre4g02640 ACH,WGDA 1 236 IAA gene family AT3G04730 49.606 2.37e-70 215.0
Stre4g02665 ACH,WGDA 3 253 IAA gene family AT1G51950 56.929 4.74e-83 248.0
Stre2g05256 ACH,WGDA 2 222 IAA gene family AT3G04730 42.986 1.48e-49 159.0
Stre2g04673 . 28 228 IAA gene family AT4G14550 55.357 9.12e-74 221.0
Stre2g04341 . 1 222 IAA gene family AT4G14550 48.062 1.50e-64 201.0
Stre2g05291 WGDA 3 266 IAA gene family AT1G51950 50.704 7.73e-76 229.0
Stre2g05277 ACH,WGDA 1 236 IAA gene family AT3G04730 48.864 6.89e-74 224.0
Stre8g00495 ACH,WGDA 44 226 IAA gene family AT2G33310 47.826 1.15e-52 171.0
Stre8g00421 ACH,WGDA 9 167 IAA gene family AT3G23030 57.225 4.17e-61 189.0
Stre3g00013 . 2 236 IAA gene family AT3G04730 47.273 1.51e-69 213.0
Stre3g00312 WGDA 1 227 IAA gene family AT4G14550 73.391 4.77e-120 339.0
Stre3g01510 . 54 246 IAA gene family AT2G33310 52.525 1.36e-60 192.0
Stre5g02902 ACH 1 235 IAA gene family AT3G04730 50.752 1.80e-72 221.0
Stre5g02886 ACH 9 163 IAA gene family AT3G23030 42.857 1.47e-37 125.0
Stre6g01411 . 76 223 IAA gene family AT2G33310 33.108 4.29e-19 80.1
Stre6g01339 . 1 228 IAA gene family AT4G14550 49.416 8.90e-75 226.0
Stre6g02339 ACH,WGDA 8 171 IAA gene family AT3G23030 55.801 2.24e-60 184.0
Stre6g02234 ACH,WGDA 44 223 IAA gene family AT2G33310 45.989 1.29e-41 141.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Stre AUX_IAA 2.5e-55 CL0072 TR AUX/IAA