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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre1g04494 ATGGCAACTGGTTGTAGAGTTTGTGTTTGGACAGGAAAGAGTTCATGGCCGGAGCTTGTTGGGGCGAACGGAGAATCAGCAGCAGCTACAATCGAGCGTGAGAATCCACGGGTCGATGCTATCGTGTTATTGGATGGAACTGCCACCACTAAGGACCTCCGGTGCGACCGTGTGTGGGTGTGGGTGAACTCCAGTGGAGTGGTGATTCGAACTCCTATCATCCAATGA 228 52.63 MATGCRVCVWTGKSSWPELVGANGESAAATIERENPRVDAIVLLDGTATTKDLRCDRVWVWVNSSGVVIRTPIIQ 75
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre1g04494 75 PRINTS Potato inhibitor I signature 40 51 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Stre1g04494 75 PRINTS Potato inhibitor I signature 15 28 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Stre1g04494 75 PRINTS Potato inhibitor I signature 52 62 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Stre1g04494 75 Gene3D Trypsin Inhibitor V, subunit A 6 74 - -
Stre1g04494 75 SUPERFAMILY CI-2 family of serine protease inhibitors 8 74 IPR036354 -
Stre1g04494 75 Pfam Potato inhibitor I family 13 74 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Stre1g04494 75 ProSitePatterns Potato inhibitor I family signature. 16 27 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Stre1g04494 75 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 11 74 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre1g04494 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr1:132619222 Stre3g00323 Stre-Chr3:4483845 dispersed
Stre Stre-Chr1:132619222 Stre1g04495 Stre-Chr1:132631281 tandem