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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre1g04495 ATGTTCTTCAATCCACAATTAACAATGTCAACCACTTGTCAAGGAAAGAGTTCATGGCCAGAGCTCGTAGGCGCAAGAGGAACAGTAGCAGCAGCTACTATCGAGCGTGAGAATCCACGGGTCGATGCTATTGTGGTGGTTGAGGGAAATTCGGTTACAGGTGATTTCCGATGCGACCGAGTGTGGGTGTGGGTGACCTCGAATGGGTTGGTCTCTCGACGTCCTGTCATTGGTTAG 237 50.21 MFFNPQLTMSTTCQGKSSWPELVGARGTVAAATIERENPRVDAIVVVEGNSVTGDFRCDRVWVWVTSNGLVSRRPVIG 78
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre1g04495 78 ProSitePatterns Potato inhibitor I family signature. 19 30 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Stre1g04495 78 Pfam Potato inhibitor I family 16 78 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Stre1g04495 78 Gene3D Trypsin Inhibitor V, subunit A 9 77 - -
Stre1g04495 78 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 12 78 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Stre1g04495 78 SUPERFAMILY CI-2 family of serine protease inhibitors 12 78 IPR036354 -
Stre1g04495 78 PRINTS Potato inhibitor I signature 55 65 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Stre1g04495 78 PRINTS Potato inhibitor I signature 43 54 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Stre1g04495 78 PRINTS Potato inhibitor I signature 18 31 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre1g04495 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr1:132631281 Stre3g00323 Stre-Chr3:4483845 dispersed
Stre Stre-Chr1:132619222 Stre1g04495 Stre-Chr1:132631281 tandem