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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre2g01801 ATGGATATGCAAACTGATGATTTCGATCGCCTTCTGTTCTTTGAGCATGCTCGCCGGGCTGCTGAATCGACTTACGCCAAAAACCCTCTCGATACCGAGAATCTAACCAGATGGGGAGGGGCTTTGCTCGAATTGTCGGGCTTCCAGAGTGTTAAGGAATCAAAATCCATGATTAAAGACGCTATTTCGAAATTGGATGAAGCATTATCTATTGATCCGAAGAAACATGATGCTTTATGGTGTATGGGAAATGCACAAACTTCTTATGGCTTTTTAGTTCCTGATAAAGATGAAGCTAAGGGTTATTTTGATTCAGCTTATACTTTCTTTCAGAAGGCTGTTGAAGAGGATCCAGGTAACGACCTTTACCGCAAATCATATGAAGTGGCTGTAAAGGCTCCTGAATTACACTCAGAGATTCATAAACAGGGTTTTGGTCAACAAATTATGGGACCTGGAGCTGGTGGAGGTCCATCAACTTCTTCAAGTGTCAAGGGTCCAAAGTCGGCACAAAAGAGCAGTGATCTGAAGTATGATATATTTGGATGGGTTATTCTTGCTGTTACTATTGTGGCATGGGTTGGATTTGCCAAATCAAACGTACCTCCGCCACCTCAGCGATAA 624 42.63 MDMQTDDFDRLLFFEHARRAAESTYAKNPLDTENLTRWGGALLELSGFQSVKESKSMIKDAISKLDEALSIDPKKHDALWCMGNAQTSYGFLVPDKDEAKGYFDSAYTFFQKAVEEDPGNDLYRKSYEVAVKAPELHSEIHKQGFGQQIMGPGAGGGPSTSSSVKGPKSAQKSSDLKYDIFGWVILAVTIVAWVGFAKSNVPPPPQR 207
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre2g01801 207 Gene3D Tetratricopeptide repeat domain 1 150 IPR011990 GO:0005515(InterPro)
Stre2g01801 207 PANTHER MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20-1-RELATED 1 206 IPR010547 GO:0005742(InterPro)|GO:0045040(InterPro)
Stre2g01801 207 MobiDBLite consensus disorder prediction 154 168 - -
Stre2g01801 207 Pfam Plant specific mitochondrial import receptor subunit TOM20 8 198 - -
Stre2g01801 207 SUPERFAMILY TPR-like 14 127 IPR011990 GO:0005515(InterPro)
Stre2g01801 207 MobiDBLite consensus disorder prediction 147 168 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre2g01801 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr11:595981 Stre2g01801 Stre-Chr2:55269950 dispersed
Stre Stre-Chr2:14760437 Stre2g01801 Stre-Chr2:55269950 dispersed
Stre Stre-Chr2:55269950 Stre2g01818 Stre-Chr2:56185028 dispersed
Stre Stre-Chr2:55269950 Stre2g00719 Stre-Chr2:14962191 transposed