AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre6g00088 ATGGCGAAATGTGGATGCAATGTGTTATTCGCAATCTTCTTCGCCACGGTTGTTCTGTTCACATATGCTTCAGCACTCAAGGAAGGAGAAACGTGCGTAGATAATAGCAATTGTGACGCAGGGTTACATTGTGAGGCTTGTGTTGCAGACGGCAATGTTCGCCCTCGGTGTACTCGCCTTCAACCCCTCAATCCGTTTTCTAAGGCGAAAGGATTACCGTTCAATCGGTACTCGTGGTTAACGACGCATAATTCGTTCGCTAAATTAGGAGAGAAATCGGCTACCGGTTCCATTGTTCTAGCTCCGACGAATCAGCAGGATTCTGTTAGTTCTCAACTCGATAATGGTGTGAGAGGGCTGATGCTTGATATGTATGACTTTGAGAATGACATTTGGTTATGTCATTCCTTTGGCGGCAGATGCTTTAACTACACAGCTTTTCAACCTGCTATTAGTGTTCTGAAAGAGGTTAGATTCTTTCTAGAAAAGAATCCAACTGAAATCATAACCATAATCATTGAAGATTATGTGACCTCACCAAAGGGTCTAACCAATGTCTTCAATGCTTCCGGTCTGATGAAATACTGGTTTCCAGCAGCCCAAATGCCAGGTGATGGTAAGGACTGGCCCACGGTTGACTCCATGGTCCGCCAAAATCACCGTTTGGTAGTTTTCACATCTAAATCTAATAAACAGGCTACTGAAGGGATTGCATATGAGTGGAAGTATTTGGTTGAAAACCAATATGGAACAGACGGGATGAAAAGTGGTTTATGCCCTAAACGTGCTGAGTCAGCAGCAATGAACACTACATCAAGATCACTGGTTTTAATGAACTATTTCCCAGATACCCCTGATATTACCCAAGCTTGCAAGCACAATTCAGACCCGTTAATAAGCATGTTGAACACGTGTCATGATGTTGCTGGTAAACGTTGGCCTAACTTCATTGCTGTTGACTTTTACAAGAGGAGTAATGGTGGTGGTGCACCTGCTGCTGTAGATATGGCTAATGGTCAGCTGGTTTGTGGTTGTAACACCATTGCAGCATGCAGGCCAAACATGACATTTGGAGCATGTAACCTCCCAGAGGCTGGAACTGCTCCTCCAACCCCAACTTCAGCAATAAAAAGCTCCGGAAGCATCGGTGGTCATACATGTCAACTTGGATGGTTGTTTGGGTCAGGTTTGATCGTGATAACTTTGTTTTTTTAA 1215 43.95 MAKCGCNVLFAIFFATVVLFTYASALKEGETCVDNSNCDAGLHCEACVADGNVRPRCTRLQPLNPFSKAKGLPFNRYSWLTTHNSFAKLGEKSATGSIVLAPTNQQDSVSSQLDNGVRGLMLDMYDFENDIWLCHSFGGRCFNYTAFQPAISVLKEVRFFLEKNPTEIITIIIEDYVTSPKGLTNVFNASGLMKYWFPAAQMPGDGKDWPTVDSMVRQNHRLVVFTSKSNKQATEGIAYEWKYLVENQYGTDGMKSGLCPKRAESAAMNTTSRSLVLMNYFPDTPDITQACKHNSDPLISMLNTCHDVAGKRWPNFIAVDFYKRSNGGGAPAAVDMANGQLVCGCNTIAACRPNMTFGACNLPEAGTAPPTPTSAIKSSGSIGGHTCQLGWLFGSGLIVITLFF 404
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre6g00088 404 Gene3D Phosphatidylinositol (PI) phosphodiesterase 63 330 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Stre6g00088 404 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 73 181 - -
Stre6g00088 404 PANTHER UNCHARACTERIZED 36 351 IPR051057 GO:0008081(PANTHER)
Stre6g00088 404 SUPERFAMILY PLC-like phosphodiesterases 69 342 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre6g00088 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
160569 Stre6g00088 Stre9g03193
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr4:94577008 Stre6g00088 Stre-Chr6:2251842 dispersed
Stre Stre-Chr6:2251842 Stre7g02156 Stre-Chr7:91246195 dispersed
Stre Stre-Chr4:90639736 Stre6g00088 Stre-Chr6:2251842 transposed
Stre Stre-Chr4:94533675 Stre6g00088 Stre-Chr6:2251842 wgd
Stre Stre-Chr6:2251842 Stre9g03193 Stre-Chr9:101789486 wgd