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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre6g00095 ATGAGTTCATTCATCAACTTCAAGAACTATGGTGATACATCACAACCAGAACTCAATTGCAGTAAACAAATGGTGGCGAATTCGCCTTTGACTCGACAATCTTCCATCTACTCGTTGACTTTTGATGAATTGCAGAACACTTTAGGTGGTGGTGGGAAAGATTTTGGATCAATGAACATGGATGAACTTTTAAAAAGTATTTGGAGTGCTGAAGAAACTCAACAATTGGCATCAACTTCCAATTTTGGAATTGACGGAAATGCCCCTAACAATGGGAGTATTCAAAGACAAGGATCTTTGACTTTACCAAGAACACTTAGCAGGAAAACAGTTGATGAAGTTTGGCGGGAATTGCTTTTAAGCAGCAGTAATGGAGTCAAAGATGGTGATTTGATCGGTCAAACGAATTTACAACCGCAAGAACGAGAACCCACGTTAGGTGAGATGACATTGGAAGATTTCTTGATGAAAGCAGGGGTAGTTGATGAAGATCACCAAATTCAAACGAATTCACAACCCGTAATACCTCAAAACGGTTCGTTTTTCGGTGATGTTTCGCAACAGAACGTTGAAAACAGTAGTTTCATTTTCGGGTTTCAGAACCCGAATCAGAACCATGGGTTTAACGGGTCGACGGTTAACCGAGTGACTGAAACCAAAACAGGTGTGAACCTGCACCCAAAACCAAAACCGCAACCACAACCCATTTTTCCCAAACAGGCTGCATTGGACTTCACAGCACCGTTGACCTGTCAACTGGCTAGCCCGGGGGGTAAAATTGGAAAATTTGAGCAACCGGTTAAGACTAGTGTGGTTCAAGCTAGTGACATAGAGAATGGAGTGATGAATATTAAAACACTTGGTGGTATTTCGGTCAACTCCCCACGAAATTTGATCCCGAAAAGCAATGTGGATTCGACTCCATCGCCTCCGTTTTATGCATTTGGTGAAGGCGATTTACGCGGTCGGAAAAATAGCGGGACTTTAGAGAAAGTGGTGGAGAGAAGGCGGAGAAGAATGATCAAGAACCGCGAGTCAGCTGCACGATCTCGGGCTCGAAAACAGGCGTACACTTTGGAACTGGAAGCTGAAGTTGCAAAACTTAAAGAAATAAACCACGAGTTGCTTAAAAAACAGGAAGAGGTCATGGAGAGACAGAATAATCAGGTGGTGGAGAAGATGAAAATGCCATGGGGAAATAAAAGATTATGCTTACGAAGAACGTTGACCGGACCTTGGTAG 1242 42.91 MSSFINFKNYGDTSQPELNCSKQMVANSPLTRQSSIYSLTFDELQNTLGGGGKDFGSMNMDELLKSIWSAEETQQLASTSNFGIDGNAPNNGSIQRQGSLTLPRTLSRKTVDEVWRELLLSSSNGVKDGDLIGQTNLQPQEREPTLGEMTLEDFLMKAGVVDEDHQIQTNSQPVIPQNGSFFGDVSQQNVENSSFIFGFQNPNQNHGFNGSTVNRVTETKTGVNLHPKPKPQPQPIFPKQAALDFTAPLTCQLASPGGKIGKFEQPVKTSVVQASDIENGVMNIKTLGGISVNSPRNLIPKSNVDSTPSPPFYAFGEGDLRGRKNSGTLEKVVERRRRRMIKNRESAARSRARKQAYTLELEAEVAKLKEINHELLKKQEEVMERQNNQVVEKMKMPWGNKRLCLRRTLTGPW 413
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre6g00095 413 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 32 411 IPR043452 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro)
Stre6g00095 413 SUPERFAMILY Leucine zipper domain 335 384 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Stre6g00095 413 SMART brlzneu 331 395 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Stre6g00095 413 Pfam bZIP transcription factor 335 385 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Stre6g00095 413 Gene3D - 333 389 - -
Stre6g00095 413 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 333 385 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Stre6g00095 413 FunFam BZIP transcription factor 333 394 - -
Stre6g00095 413 CDD bZIP-plant-BZIP46 340 381 - -
Stre6g00095 413 Coils Coil 354 396 - -
Stre6g00095 413 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 338 353 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Stre6g00095 413 MobiDBLite consensus disorder prediction 80 99 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre6g00095 K14432 ABA responsive element binding factor
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr1:106892541 Stre6g00095 Stre-Chr6:2441066 dispersed
Stre Stre-Chr3:16137611 Stre6g00095 Stre-Chr6:2441066 dispersed
Stre Stre-Chr6:2441066 Stre9g02369 Stre-Chr9:58232754 dispersed
Stre Stre-Chr6:2441066 Stre4g02048 Stre-Chr4:100790430 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Stre9g02755 ACH,WGDA 12 171 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 42.424 8.11e-33 112.0
Stre9g00216 WGDA 5 143 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G62420 57.857 3.29e-53 163.0
Stre9g02752 ACH 9 171 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 44.578 1.48e-39 129.0
Stre9g00771 . 1 376 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G35530 58.377 2.58e-139 400.0
Stre9g02369 ACH 5 416 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G45249 51.732 2.11e-110 327.0
Stre9g01573 WGDA 116 309 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06960 26.267 2.33e-17 77.4
Stre9g00894 ACH,WGDA 12 297 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G56850 52.484 4.99e-90 269.0
Stre9g00358 WGDA 1 382 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G46270 49.257 9.31e-105 311.0
Stre9g02666 ACH 173 323 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 41.722 1.74e-24 100.0
Stre1g03606 . 1 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 74.924 6.08e-179 496.0
Stre1g01533 ACH,WGDA 122 226 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G22850 43.81 1.61e-20 82.8
Stre1g02323 . 13 297 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G56850 51.667 1.73e-80 243.0
Stre1g00529 . 21 339 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G06070 65.774 3.71e-148 426.0
Stre1g03599 . 1 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 74.924 3.46e-178 496.0
Stre1g02743 . 56 122 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 50.746 4.56e-14 62.4
Stre1g01658 . 114 313 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06950 25.506 3.87e-09 54.7
Stre1g02999 . 1 441 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G36270 47.312 3.86e-104 314.0
Stre1g05064 . 27 720 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40950 43.6 1.85e-130 401.0
Stre1g05088 . 6 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 60.542 4.80e-136 388.0
Stre1g00208 ACH 1 367 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40620 54.688 2.27e-110 324.0
Stre1g02388 . 24 719 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40950 46.296 3.79e-155 464.0
Stre1g02364 . 32 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06950 65.0 2.03e-131 379.0
Stre10g02600 . 1 481 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G08320 60.853 0.0 591.0
Stre10g01034 WGDA 37 276 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G24800 41.313 1.54e-52 172.0
Stre10g00896 . 1 372 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G35530 62.4 1.98e-154 439.0
Stre10g03066 WGDA 33 153 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G11260 69.355 1.37e-50 159.0
Stre11g01282 . 1 310 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G36730 53.043 1.16e-105 310.0
Stre11g02332 . 102 318 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06960 27.477 7.85e-21 87.4
Stre11g01681 . 31 163 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 55.797 4.88e-39 129.0
Stre11g01007 . 1 307 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 52.28 1.95e-96 286.0
Stre11g01988 . 1 246 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G16770 52.075 1.60e-83 248.0
Stre11g00624 . 58 157 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G16770 46.078 2.02e-21 84.7
Stre11g00413 WGDA 25 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 52.414 6.60e-39 129.0
Stre11g00422 . 25 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 52.414 1.29e-38 128.0
Stre11g02014 . 76 450 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G38900 38.22 1.26e-47 165.0
Stre11g00913 . 1 517 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G38900 56.887 2.20e-173 499.0
Stre4g02048 ACH 21 416 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G45249 51.3 3.45e-105 315.0
Stre4g01013 . 1 302 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G28770 38.462 9.56e-69 219.0
Stre4g01192 . 62 285 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35900 40.529 2.40e-38 133.0
Stre4g02144 WGDA 9 171 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 47.305 1.36e-41 135.0
Stre4g01814 ACH,WGDA 69 151 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G49760 46.988 1.21e-17 73.2
Stre4g01637 WGDA 30 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 59.286 7.64e-47 150.0
Stre4g01084 . 1 302 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G28770 39.052 6.02e-68 218.0
Stre4g01868 ACH,WGDA 1 302 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G36730 54.519 3.54e-104 307.0
Stre2g04434 . 62 260 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35900 41.706 2.93e-26 101.0
Stre2g00246 . 1 248 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G16770 53.532 3.72e-85 252.0
Stre2g00101 . 29 288 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40950 37.716 7.88e-33 126.0
Stre2g04542 ACH,WGDA 54 153 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 62.0 3.16e-36 121.0
Stre2g00030 . 1 452 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G68640 59.834 2.91e-163 466.0
Stre2g03210 ACH 4 300 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 30.0 4.15e-27 108.0
Stre2g04408 . 1 236 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G28770 43.125 3.94e-57 187.0
Stre2g04559 . 40 153 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 56.14 3.21e-36 122.0
Stre2g03615 ACH 9 164 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 47.5 3.49e-44 142.0
Stre2g04913 WGDA 20 159 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G34590 52.083 8.53e-44 140.0
Stre2g01310 . 225 298 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G36730 52.703 7.35e-17 72.4
Stre2g01773 . 134 315 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G44080 49.733 3.48e-43 145.0
Stre2g04725 WGDA 1 302 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G36730 55.793 2.48e-105 309.0
Stre2g04437 . 62 236 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35900 37.634 7.97e-14 67.4
Stre2g00266 . 1 248 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G16770 53.532 3.72e-85 252.0
Stre2g04575 . 40 154 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 55.652 1.62e-36 123.0
Stre2g04652 ACH,WGDA 71 152 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G15830 47.561 1.60e-18 76.6
Stre2g01260 . 219 298 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G36730 50.0 1.41e-16 72.0
Stre2g01306 . 219 298 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G36730 51.25 6.97e-17 73.2
Stre2g05874 WGDA 14 337 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G43700 49.24 1.63e-86 261.0
Stre8g01961 ACH 1 365 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40620 52.865 1.22e-103 306.0
Stre8g01311 . 15 297 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G56850 48.428 9.24e-78 237.0
Stre8g01574 . 4 322 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G43700 43.789 1.65e-67 213.0
Stre8g01154 . 23 416 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06839 56.629 6.04e-165 473.0
Stre8g01163 . 23 416 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06839 56.629 6.04e-165 473.0
Stre3g02118 . 50 339 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G06070 58.02 3.45e-104 310.0
Stre3g00753 . 34 277 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G24800 49.057 6.25e-66 207.0
Stre3g02120 . 50 339 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G06070 56.997 3.60e-102 304.0
Stre3g02002 . 38 165 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 28.906 9.35e-14 62.8
Stre3g01251 . 31 392 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G49720 37.436 3.42e-59 194.0
Stre3g01112 . 1 315 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 47.576 4.06e-83 251.0
Stre3g00813 . 1 372 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G35530 59.947 3.24e-143 410.0
Stre3g03164 . 147 469 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G19490 34.911 8.51e-36 132.0
Stre3g00784 . 1 372 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G35530 60.477 1.01e-143 412.0
Stre3g02115 . 50 339 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G06070 57.679 1.91e-103 306.0
Stre3g02006 . 38 165 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 32.031 3.04e-16 69.3
Stre3g01656 . 111 317 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 27.686 3.61e-18 80.9
Stre3g00863 WGDA 34 277 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G24800 49.231 4.15e-65 205.0
Stre5g02758 ACH,WGDA 23 159 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G34590 53.623 3.79e-44 142.0
Stre5g02399 WGDA 15 337 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G43700 47.368 1.23e-78 242.0
Stre5g01574 WGDA 1 151 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G11260 68.874 1.07e-55 171.0
Stre5g00474 . 69 162 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G13600 62.766 7.24e-33 114.0
Stre7g02066 ACH 1 315 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G36730 46.855 1.58e-74 228.0
Stre7g00416 WGDA 23 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 54.194 1.68e-42 140.0
Stre7g01491 . 63 285 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35900 32.9 1.79e-18 77.8
Stre7g02105 ACH,WGDA 101 213 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G22850 39.823 3.97e-21 85.1
Stre7g01552 . 63 285 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35900 33.478 2.09e-19 80.5
Stre7g01279 . 208 265 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35900 53.448 2.67e-14 67.0
Stre7g01365 . 155 287 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G42990 47.887 1.45e-15 72.8
Stre7g01280 . 217 285 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35900 50.704 1.08e-14 67.4
Stre7g02726 . 213 295 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 45.783 1.89e-16 76.6
Stre7g01674 . 1 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 72.81 6.82e-166 462.0
Stre6g02683 . 114 309 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 25.248 2.68e-13 65.9
Stre6g03045 WGDA 1 381 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G46270 49.64 3.30e-106 316.0
Stre6g02029 ACH,WGDA 12 297 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G56850 51.899 1.58e-93 277.0
Stre6g00951 . 82 244 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G03970 43.956 5.09e-28 106.0
Stre6g00095 . 1 454 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G34000 43.487 4.52e-96 293.0
Stre6g00477 . 1 308 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 55.692 1.47e-101 299.0
Stre6g02531 WGDA 12 143 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G62420 58.333 1.18e-52 162.0
Stre6g00442 WGDA 112 309 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06960 25.225 1.24e-16 75.9
Stre6g01919 . 261 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06950 55.128 2.08e-19 79.3
Stre6g00165 ACH 9 146 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 47.101 3.37e-35 118.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Stre bZIP_1 1.6e-11 CL0018 TF bZIP