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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre6g00096 ATGGCGGATTCCGATCAACCACCTCCAACTCTCTTCAAACATCGCTCGTGGTCCCCGGACATACACCGAGACATAGAATGGCAGAAGCTCAAGGACAATCAGCGACGCCGGAGGAAGTGCGTCGATGGTGCTACCGAATTTGACTTCACCGATGATGATGTGAAGGAATTGAAAGCGTGCTTTGATCTCGGTTTCGGTTTTGATCCGTCTAGCGATTTGGATCCGAAACTTGAGCAAGCTTTTCCTGCTCTCGGACTTTACACCGCCGTTAACCGACGGTACGACAGCAGACTCCTGACCAGATCGTCGTCGTTAAGCTATGGTTCGTCGTCAAGTTTAAGCACAGACATCATCAATATTGGTGATGATCCAGTGAAGGTGCAGACGAAACTGAAACAATGGGCGCAACTGGTTTCTTGCTCGATTCTGGAATCTTCATCTGAATTAGTTAATAATAACAAACATGCTGAAAAGTAA 477 47.17 MADSDQPPPTLFKHRSWSPDIHRDIEWQKLKDNQRRRRKCVDGATEFDFTDDDVKELKACFDLGFGFDPSSDLDPKLEQAFPALGLYTAVNRRYDSRLLTRSSSLSYGSSSSLSTDIINIGDDPVKVQTKLKQWAQLVSCSILESSSELVNNNKHAEK 158
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre6g00096 158 Pfam Protein of unknown function (DUF1685) 50 104 IPR012881 -
Stre6g00096 158 PANTHER OSJNBA0071G03.3 PROTEIN 10 143 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre6g00096 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
159563 Stre2g03425 Stre6g00096
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr1:37520743 Stre6g00096 Stre-Chr6:2450756 dispersed
Stre Stre-Chr4:93743802 Stre6g00096 Stre-Chr6:2450756 wgd
Stre Stre-Chr6:2450756 Stre9g01754 Stre-Chr9:32283444 wgd