AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stre6g00221 | ATGATGATACATGAGTTAAAGATGAGTACACTATTCAAATCAACCTTGCCATTGTTATTCTTATGGTTTTTTCTCGCACCTACCGCGTATTCTGGTGGGTTGGTTCGAGTTGGACTCAAGAAGAGGAAAATCAACCAACTAAATCAATTTAGATATGGTGGATCTAATGATGGAAATGGTAGAAGAAATTACGGTTTTCATAGTAATTTAAAGCGTTTGGATGGTGATGCAATTGCGCTAAACAATTTCATGGATGCTCAATATTATGGTGAGATTGGTATCGGTACACCACCTCAAAAGTTCACTGTGATTTTTGACACCGGTAGTTCTAATCTTTGGGTGCCTTCTACAAAGTGCTACTTATCTGTGGCTTGCATTGTTCACTCAAAGTATAAGTCTAGTCAGTCAAGTTCTTATAAGAAAAATGGGAAATCAGCTGCAATTCAATATGGAACTGGTTCAATCTCTGGTTTTTTTAGCCAAGATTCTATCAAACTTGGTGATCTTGTTGTGAAAGAACAAGATTTTATAGAGGCAACTAAGGAGCCAGGTGTCACATTCTTAACCGCCAAGTTTGATGGCATTCTTGGCCTTGGGTTTCAAGAAATATCTGTTGGGGATGCTGTTCCTGTTTGGTACAACATGTTGAAACAAGATCTTGTTCAAGATCCTATATTTTCATTTTGGCTTAACCGCCATGCTGATGAGGACAACGGGGGTGAACTTGTTTTTGGTGGTGTTGACCATAAACATTACAAGGGTAAACACACATTTGTTCCTGTTACTCAAAAAGGCTATTGGCAGTTTGATATGGGTGACGTCTTGATTAATGACAACACAACCGGATTTTGCTCTGATGGTTGTGCAGCAATTGCTGATTCTGGAACCTCTTTGTTGGCTGGTCCAACGGCTGTTGTTGCTCAAATAAATCAAGCCATTGGTGCTGCTGGTGTTATGAGCGTACAATGCAAAACAATGGTCAATCAATATGGGAAAACTATACTTAATATGTTACTACATGAGTCACAACCTAACAAAATCTGTTCTCAAATGAAGTTATGCTCCTATGATGGTTCTCATGATACTAGCATGATAATTAAGAGTGTGGTTGACAAGAATAATGGGAAATCATCTGGTGTAGATGATGATTTATGTAGTCTTTGTGAGATGGCTGTTGTTTGGATGGAAAGTAAAATGGTGCGAAATGAAAGTGAAGATGAAATAATTAATCATGTTGATCAGTTGTGTGAGCGGTTACCGAATCCAATGGGAGAATCTAGAGTCGAATGCGACGGTCTTTCATCCATGCCGAATATTGCTTTTACAATTGGTGGTAAAATTTTTGACCTCTCCCCTGAAGAGTATATCCTGAAAGTTGGTGAGGGTGCAGCAACACAATGCATCAGTGGATTTACTCCTCTTGACATCCCACCTCCTCGTGGGCCCCTCTGGATATTGGGAGATATTTTTATGGGTAAATATCATACCGTGTTCGATTATGGTAGATCACGAGTAGGGTTTGCTGAAGCGGTTTGA | 1536 | 39.39 | MMIHELKMSTLFKSTLPLLFLWFFLAPTAYSGGLVRVGLKKRKINQLNQFRYGGSNDGNGRRNYGFHSNLKRLDGDAIALNNFMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTKCYLSVACIVHSKYKSSQSSSYKKNGKSAAIQYGTGSISGFFSQDSIKLGDLVVKEQDFIEATKEPGVTFLTAKFDGILGLGFQEISVGDAVPVWYNMLKQDLVQDPIFSFWLNRHADEDNGGELVFGGVDHKHYKGKHTFVPVTQKGYWQFDMGDVLINDNTTGFCSDGCAAIADSGTSLLAGPTAVVAQINQAIGAAGVMSVQCKTMVNQYGKTILNMLLHESQPNKICSQMKLCSYDGSHDTSMIIKSVVDKNNGKSSGVDDDLCSLCEMAVVWMESKMVRNESEDEIINHVDQLCERLPNPMGESRVECDGLSSMPNIAFTIGGKIFDLSPEEYILKVGEGAATQCISGFTPLDIPPPRGPLWILGDIFMGKYHTVFDYGRSRVGFAEAV | 511 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stre6g00221 | 511 | FunFam | Vacuolar aspartic proteinase | 382 | 510 | - | - | |
| Stre6g00221 | 511 | ProSitePatterns | Eukaryotic and viral aspartyl proteases active site. | 290 | 301 | IPR001969 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
| Stre6g00221 | 511 | SUPERFAMILY | Saposin | 319 | 420 | IPR011001 | - | |
| Stre6g00221 | 511 | ProSitePatterns | Eukaryotic and viral aspartyl proteases active site. | 103 | 114 | IPR001969 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
| Stre6g00221 | 511 | SUPERFAMILY | Acid proteases | 16 | 510 | IPR021109 | - | |
| Stre6g00221 | 511 | ProSiteProfiles | Saposin B type domain profile. | 381 | 422 | IPR008139 | - | |
| Stre6g00221 | 511 | Pfam | Eukaryotic aspartyl protease | 87 | 510 | IPR033121 | - | |
| Stre6g00221 | 511 | CDD | phytepsin | 78 | 509 | IPR033869 | GO:0004190(InterPro) | |
| Stre6g00221 | 511 | PANTHER | BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED | 29 | 510 | IPR001461 | GO:0004190(InterPro)|GO:0004190(PANTHER)|GO:0006508(InterPro)|GO:0006508(PANTHER) | |
| Stre6g00221 | 511 | Gene3D | Acid Proteases | 247 | 510 | IPR021109 | - | |
| Stre6g00221 | 511 | ProSiteProfiles | Peptidase family A1 domain profile. | 88 | 508 | IPR033121 | - | |
| Stre6g00221 | 511 | ProSiteProfiles | Saposin B type domain profile. | 318 | 358 | IPR008139 | - | |
| Stre6g00221 | 511 | FunFam | Lysosomal aspartic protease | 75 | 316 | - | - | |
| Stre6g00221 | 511 | Gene3D | - | 318 | 420 | - | - | |
| Stre6g00221 | 511 | PRINTS | Pepsin (A1) aspartic protease family signature | 240 | 253 | IPR001461 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
| Stre6g00221 | 511 | PRINTS | Pepsin (A1) aspartic protease family signature | 94 | 114 | IPR001461 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
| Stre6g00221 | 511 | PRINTS | Pepsin (A1) aspartic protease family signature | 290 | 301 | IPR001461 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
| Stre6g00221 | 511 | PRINTS | Pepsin (A1) aspartic protease family signature | 484 | 499 | IPR001461 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
| Stre6g00221 | 511 | Pfam | Saposin-like type B, region 2 | 322 | 354 | IPR008138 | - | |
| Stre6g00221 | 511 | Gene3D | Acid Proteases | 35 | 246 | IPR021109 | - | |
| Stre6g00221 | 511 | Pfam | Saposin-like type B, region 1 | 383 | 420 | IPR007856 | GO:0006629(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stre6g00221 | K08245 | phytepsin [EC:3.4.23.40] |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 159605 | Stre2g03640 | Stre6g00221 | |
| 160107 | Stre3g01216 | Stre6g00221 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Stre | Stre-Chr1:126445775 | Stre6g00221 | Stre-Chr6:5897831 | dispersed | |
| Stre | Stre-Chr2:137977143 | Stre6g00221 | Stre-Chr6:5897831 | dispersed | |
| Stre | Stre-Chr3:15827243 | Stre6g00221 | Stre-Chr6:5897831 | dispersed | |
| Stre | Stre-Chr6:5897831 | Stre9g02791 | Stre-Chr9:91508595 | dispersed | |
| Stre | Stre-Chr6:5897831 | Stre9g01680 | Stre-Chr9:30309949 | wgd |