AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre6g00240 ATGTTGATTAGCTTACAGAATGCAGATCCTGATAAATTCACAATTTATATACACTCGAAGCCTGGTTTTGTGTTTGATGCATCATCTACTAGATCAGCTTTTTTCTACGACCGACAGCTGGAAAACAGTATTGAGGTGGGTTGGGGTAAACCAACTATGATTAAAGCAGAAAAGCTATTGTTCAAAGCAGCCCTTGATGATCCACAGAATCATATATTTGTTCTTCTCTCTGACAGTTGTGTCCCTCTATATAATTTCAGTTACATATACACATATTTAATGTCATCTCCAAGAAGTTTCGTGGACAGCTTTATTGATGATACCAGTGGCAATGAAAAACGTTATAATCCAGAGATGTCACGTGACATACCTGAAAACAAATGGCGGAAAGGATCCCAGTGGATCACATTGATGAGAAACCATGCAGAGGTGGTTGCATATGATCATGTTGTTTTCCCAATATTTAACAAACACTGCAAGCGGCGACCCCTTTTAGACTTGAGCAAGGGAAACGAGTCTCTTAAAGAACAGCAGCAACACAATTGCATCCCGGATGAACACTATGTCCCCACCTTACTTGCAATGCGGGGATTTGAAGAAGAATTGGTGAGAAGAACATTGACTTATTGTTTATGGAACCATTCTACTGAAACCATGAATACACAAGCATGGCACCCTGTAACATTTGTTTATGCAACTGCTACCCACAATAACATTCAAAATATTAAGGATATTGACCATGTGTATTATAAGTCTGAGAACCGAACCGAATGGTGCAGTAAATCTAGCATTGGACCATGTTACTTATTTGCAAGGAAGTTCACGCGTGGTGCAGCCATGCGCCTTTTGACCAACGGGGTGGTGGGTCCATATGATCCAAACACATTGTTTTTGGACCCGAAATAG 906 40.29 MLISLQNADPDKFTIYIHSKPGFVFDASSTRSAFFYDRQLENSIEVGWGKPTMIKAEKLLFKAALDDPQNHIFVLLSDSCVPLYNFSYIYTYLMSSPRSFVDSFIDDTSGNEKRYNPEMSRDIPENKWRKGSQWITLMRNHAEVVAYDHVVFPIFNKHCKRRPLLDLSKGNESLKEQQQHNCIPDEHYVPTLLAMRGFEEELVRRTLTYCLWNHSTETMNTQAWHPVTFVYATATHNNIQNIKDIDHVYYKSENRTEWCSKSSIGPCYLFARKFTRGAAMRLLTNGVVGPYDPNTLFLDPK 301
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre6g00240 301 PANTHER CORE-2-I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 13 283 IPR044174 GO:0016757(InterPro)
Stre6g00240 301 Pfam Core-2-I-Branching enzyme 11 242 IPR003406 GO:0016020(InterPro)|GO:0016757(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre6g00240 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr6:6484054 Stre6g03416 Stre-Chr6:100213196 dispersed
Stre Stre-Chr6:6484054 Stre9g01141 Stre-Chr9:18125834 transposed
Stre Stre-Chr6:6484054 Stre9g01150 Stre-Chr9:18360740 transposed