AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre6g00242 ATGGCTTCAAGTTCTGAAATAGGGCTTGCAGCAGCTATAAACATCCTCACTGCATTTGCATTTCTAATAGCATTTGCTATACTTCGAATTCAACCTTTAAACGATAGGGTTTATTTTCCAAAATGGTATTTAAAGGGATTAAGAAACAACCCAATTCAAACCGGTGCATTTGTGCAAAAGTTTGTAAATTTGGATTTTAGATCATATTTGAGGTTTCTGAACTGGATGCCTGCTGCATTGCACATGCCAGAACCTGAACTTATTGATCATGCTGGATTGGATTCTGTTGTTTATTTGAGAATTTACTTGACAGGACTCAAGATATTTGTTCCAATTGCATGTCTTGCTTTCACAATCATGGTACCAGTAAATTGGACAAATCGGACTTTAGAACAATCTAAATTAACATACAGTGACATAGATAAACTTTCAATATCCAACATTCCCAATGGATCAAACAGATTCTGGACTCATTTAGTCATGGCTTACGCTTTTACCTTTTGGACATGTTATATTTTAAAAAGAGAGTATGCAATAATTGCAAAAATGCGGTTGCATTTTATTGCATCGGAACAACGCCGACCTGATCAGTTTACTGTGCTTGTGAGAAATGTGCCACCAGATCCCGATGAAACGGTCAATGAACTTGTGGAACATTTTTTTCTTGTTAATCATCCAGATCATTATTTATCTCATCAGGTTGTTTACAACGCGAATTCATTATCTAAGTTGGTAAATGAAAAGAAAACAAAGCAGAATTGGCTTGACTATTATCAACTGAAATATAACAGAAATAACCAATCAAAAAGACCATCAATGAAGACCGGATATCTTGGCTTGTGCGGGAAAAAGGTGGATGCAATTGATTATTATCAATCTGAGATTGATAAACTATCGAAAGAAATATGTAAAGAAAGGGAAAAGATTACAACAAGCTCCAAATATGTGATGCCAGCTGCATTTGTTTCATTTAAAACGCGTTGGGGGGCTGCTGTTTGTGCACAAACAGAACAATCAAGAAACCCAACAATCTGGTTAACCGAGTGGGCCCCAGAACCGCGCGATGTTTATTGGGATAATCTTGCAATACCATTTGTTTCACTCACAATTAGAAGACTTATAATTGCGGTTTCCTTTTTCTTTCTTACATTCTTCTTCATGATCCCAATAACATTTGTGCAATCACTCGCAAATATTGATGGGATTGTGAAAGCAGCTCCTTTTTTGCAGGGGATTTTGGATGTGGAGTTTGTAAAATCTTTTATTCAAGGTGTTCTTCCAGGAATTGCTTTGAAAATTTTCTTAATCATTCTACCATCAATCTTGATGATGATGTCTAAATTTGAAGGATTTACATCAATATCTGCATTAGAGAGAAGATCTGCAACAAGATATTATATTTTCCAATTTATTAATGTTTTTCTTGGAAGCATAATTACTGGGACTGCATTTCAACAGCTTAATAACTTCATCCACCAGTCTGCAAACACCATCCCAGTGACAATTGGAGCATCTATACCTATGAAAGCAACCTTCTTCATAACCTATATTATGGTAGATGGTTGGGCTGGAGTTGCAGGAGAAATATTAAGATTAAAACCATTAATATTTTACCATTTAAAAAATTTCTTTTTAGTAAAAACAGAAAAAGACAGAGAAGAAGCAATGAATCCTGGAAGTTTGTCTTTTAATACGGGCGAACCGCAAATACAGTTATACTTTTTACTTGGTCTTGTTTATGCTGTTGTCACACCGATTCTGCTTCCGTTTATAGTTGTGTTTTTCGGATTGGCTTACGTGGTATATCGTCATCAGATTATAAATGTGTATAATCAACAATACGAGAGTGCGGGTGCATTTTGGCCCGATGTTCACGGGCGGATCATAACCGCACTGATTGTTTCACAATTGTTGTTAATGGGTTTACTTAGTACAAAAGAAGCAGCTCAATCAACTCCATTGCTAATCGTACTTCCGGTTTTGACCGTTTGGTTTCATAGATTCTGCAAAGGTCGGTTTGAACCCGCTTTTGTTAGGTACCCTTTACAGGAGGCTATGATGAAAGACACACTAGAACGCGTACGGGAGCCATGTTTAAATGTTAAAGACTATTTACAAAACGCATACGCTCACCCGGTTTTTAATAACGAGAACAAATGGGACGGGAGTGATGATGGAGTAAGTGATGACGAGTGGCTTAAAGAACCCACATTGGTCGCAACAAAACGATCATCAAGAACAAATACACCGGCTAGAAGTCAACGGAGCGAGTCAACACGAACATTGTTGTGTGTTACAGACGAAAGATCTTGTCCTTGA 2319 37.04 MASSSEIGLAAAINILTAFAFLIAFAILRIQPLNDRVYFPKWYLKGLRNNPIQTGAFVQKFVNLDFRSYLRFLNWMPAALHMPEPELIDHAGLDSVVYLRIYLTGLKIFVPIACLAFTIMVPVNWTNRTLEQSKLTYSDIDKLSISNIPNGSNRFWTHLVMAYAFTFWTCYILKREYAIIAKMRLHFIASEQRRPDQFTVLVRNVPPDPDETVNELVEHFFLVNHPDHYLSHQVVYNANSLSKLVNEKKTKQNWLDYYQLKYNRNNQSKRPSMKTGYLGLCGKKVDAIDYYQSEIDKLSKEICKEREKITTSSKYVMPAAFVSFKTRWGAAVCAQTEQSRNPTIWLTEWAPEPRDVYWDNLAIPFVSLTIRRLIIAVSFFFLTFFFMIPITFVQSLANIDGIVKAAPFLQGILDVEFVKSFIQGVLPGIALKIFLIILPSILMMMSKFEGFTSISALERRSATRYYIFQFINVFLGSIITGTAFQQLNNFIHQSANTIPVTIGASIPMKATFFITYIMVDGWAGVAGEILRLKPLIFYHLKNFFLVKTEKDREEAMNPGSLSFNTGEPQIQLYFLLGLVYAVVTPILLPFIVVFFGLAYVVYRHQIINVYNQQYESAGAFWPDVHGRIITALIVSQLLLMGLLSTKEAAQSTPLLIVLPVLTVWFHRFCKGRFEPAFVRYPLQEAMMKDTLERVREPCLNVKDYLQNAYAHPVFNNENKWDGSDDGVSDDEWLKEPTLVATKRSSRTNTPARSQRSESTRTLLCVTDERSCP 772
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre6g00242 772 MobiDBLite consensus disorder prediction 740 760 - -
Stre6g00242 772 MobiDBLite consensus disorder prediction 738 760 - -
Stre6g00242 772 Pfam Cytosolic domain of 10TM putative phosphate transporter 197 360 IPR027815 -
Stre6g00242 772 Pfam Late exocytosis, associated with Golgi transport 9 176 IPR032880 -
Stre6g00242 772 PANTHER PROBABLE MEMBRANE PROTEIN DUF221-RELATED 7 723 IPR045122 GO:0005227(PANTHER)|GO:0005227(InterPro)|GO:0005886(PANTHER)
Stre6g00242 772 Pfam Calcium-dependent channel, 7TM region, putative phosphate 371 643 IPR003864 GO:0016020(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre6g00242 K21989 calcium permeable stress-gated cation channel
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Event-related genes

Select Gene_1 Gene_2 Event_name
435537 Stre6g00227 Stre6g00242
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr10:21405873 Stre6g00242 Stre-Chr6:6494949 dispersed
Stre Stre-Chr4:46842806 Stre6g00242 Stre-Chr6:6494949 dispersed
Stre Stre-Chr6:6225954 Stre6g00242 Stre-Chr6:6494949 dispersed
Stre Stre-Chr6:6417483 Stre6g00242 Stre-Chr6:6494949 dispersed
Stre Stre-Chr6:6494949 Stre6g03417 Stre-Chr6:100216245 dispersed
Stre Stre-Chr6:6431869 Stre6g00242 Stre-Chr6:6494949 proximal