AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre6g00245 ATGAACGATTCCATTACCGAGTCAAACCCCCCATTATTACCGAGTCTCAACGAGGTGGAGGCAATTATCAAATACAAATTCAAAAACATAGAGTTGCTAAAAGAAGCTTTCACTCACAACTCGTATAAAGACGAAGATTGCCAATCTTATGAGCGGCTTGAGTACCTCGGTGACTCGGTTTTGAACCTTTTGTTCGCCAAAGAACATTACCATTCGTACCTGAAAATGAAGTCGGGTGAGTTGACTCAGTTGCGGGCCACCAATGTCGACACTGAAGCGTTGGCTCGCGTTGCATTCAAACATGGGTTACATAGGTTTCTAAAACACGAGGATCCATCACTTAACGATCGGGTGCAAGAACTTATGGAAGGAATTAAAGAATACCCATTGCACTCTCATGGTTTGATTAATTCTCCTAAAATACTTGCAGACATTGTTGAAGCTGTTGTTGGTGCGATCTACGTTGATGCCGGTTTATCAATCGATGAAACATGGGAGATTGAGATAGAAAATGTGATGTGGAAGGTTATAGATTTTAAAAAGATAGATATTTTGATAATTTATAAAGATGAAGATAAAGAATGCGATGTAAATGCTATAAGACAATAA 609 39.08 MNDSITESNPPLLPSLNEVEAIIKYKFKNIELLKEAFTHNSYKDEDCQSYERLEYLGDSVLNLLFAKEHYHSYLKMKSGELTQLRATNVDTEALARVAFKHGLHRFLKHEDPSLNDRVQELMEGIKEYPLHSHGLINSPKILADIVEAVVGAIYVDAGLSIDETWEIEIENVMWKVIDFKKIDILIIYKDEDKECDVNAIRQ 202
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre6g00245 202 Gene3D Ribonuclease III domain 11 183 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Stre6g00245 202 ProSiteProfiles Ribonuclease III family domain profile. 16 158 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Stre6g00245 202 SUPERFAMILY RNase III domain-like 15 165 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Stre6g00245 202 Pfam Ribonuclease III domain 51 158 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Stre6g00245 202 PANTHER DICER-RELATED 9 178 - GO:0003723(PANTHER)|GO:0004525(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030422(PANTHER)
Stre6g00245 202 CDD RIBOc 31 172 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Stre6g00245 202 ProSitePatterns Ribonuclease III family signature. 51 59 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Stre6g00245 202 FunFam Endoribonuclease dicer-like 1 12 180 - -
Stre6g00245 202 SMART riboneu5 31 181 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre6g00245 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr6:6589871 Stre6g00848 Stre-Chr6:26687708 dispersed
Stre Stre-Chr6:6589871 Stre6g00246 Stre-Chr6:6595447 tandem