AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre6g00251 ATGGCGAAGACAAAACCTGGAAAGAAAGACGTAGATTCATACACCATCAAAGGCACCAACAAAATCGTCAGACCCGGCGATTGTGTGTTACTGAGGCCAGCTGATTCGGACAAAGCTCCGTACGTGGCTCGAGTGGAGAAGCTCGAGGTTGATCATCGGAACAACGTGAAGGTCAAGGTACGGTGGTATTACCGGCCGGAGGAGTCATTGGGCGGCCGGCGGCCGTTTCATGGTGTTAAGGAGCTGTTTTTATCAGATCATTACGATTTTCAAAGTGCACATACTATTGAAGGAAAGTGTGTTGTTCATTCGTTCAAGAACTACACGAAGCTTGAAAATGTTGGTACTGAAGATTATTTCTGCCGTTTTGAATACAAATCTGCTACTGGTGGTTTCACTCCTGATCGTGTTGCAGTATACTGCAAGTGTGAGATGCCCTATAATCCAGATGATTTGATGGTGCAGTGTGAAGCATGCAAAGACTGGTTCCATCCAGGTTGTATGGGAATGACAATTGAAGATGCAAAGAAATTGGAGCAGTTTTTGTGTTCTGATTGCAGCTCTGATGATGATGCAAAAGGACCATTGAATTCATTCCATGTATCATCATCTTCTGAGGCTAAGCTGGAATCGAAGCGCAGAAAGCGATAA 651 44.7 MAKTKPGKKDVDSYTIKGTNKIVRPGDCVLLRPADSDKAPYVARVEKLEVDHRNNVKVKVRWYYRPEESLGGRRPFHGVKELFLSDHYDFQSAHTIEGKCVVHSFKNYTKLENVGTEDYFCRFEYKSATGGFTPDRVAVYCKCEMPYNPDDLMVQCEACKDWFHPGCMGMTIEDAKKLEQFLCSDCSSDDDAKGPLNSFHVSSSSEAKLESKRRKR 216
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre6g00251 216 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Stre6g00251 216 CDD BAH-BAHCC1 22 156 - -
Stre6g00251 216 FunFam Chromatin remodeling protein EBS 1 132 - -
Stre6g00251 216 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682(InterPro)
Stre6g00251 216 SUPERFAMILY FYVE-PHD zinc finger 130 188 IPR011011 -
Stre6g00251 216 SMART PHD-3 140 187 IPR001965 -
Stre6g00251 216 MobiDBLite consensus disorder prediction 191 216 - -
Stre6g00251 216 Pfam PHD-finger 141 186 IPR019787 -
Stre6g00251 216 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 130 204 IPR013083 -
Stre6g00251 216 FunFam Bromo-adjacent homology (BAH) domain-containing protein 133 204 - -
Stre6g00251 216 Pfam BAH domain 23 134 IPR001025 GO:0003682(InterPro)
Stre6g00251 216 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
Stre6g00251 216 PANTHER OS08G0421900 PROTEIN 1 208 - -
Stre6g00251 216 SMART BAH-4 21 136 IPR001025 GO:0003682(InterPro)
Stre6g00251 216 Gene3D - 1 129 IPR043151 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre6g00251 K25868 chromatin remodeling protein
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
159610 Stre2g03647 Stre6g00251
160103 Stre3g01203 Stre6g00251
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr5:104126844 Stre6g00251 Stre-Chr6:6780079 dispersed
Stre Stre-Chr6:6780079 Stre9g02761 Stre-Chr9:90441540 dispersed
Stre Stre-Chr2:138021392 Stre6g00251 Stre-Chr6:6780079 wgd
Stre Stre-Chr3:15691431 Stre6g00251 Stre-Chr6:6780079 wgd
leaf

Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Stre9g00950 . 1107 1243 Core DNA Replication Machinery family AT4G02110 22.628 9.56e-06 47.0
Stre9g02508 . 17 396 Core DNA Replication Machinery family AT2G20980 50.0 4.64e-120 352.0
Stre9g00556 . 4 620 Core DNA Replication Machinery family AT1G67630 55.34 0.0 677.0
Stre9g00212 WGDA 1022 1325 Core DNA Replication Machinery family AT4G02110 56.386 8.68e-115 384.0
Stre9g01702 . 263 337 Core DNA Replication Machinery family AT4G14700 34.211 1.00e-06 47.0
Stre9g01043 ACH,WGDA 1 106 Core DNA Replication Machinery family AT4G18590 57.547 4.58e-46 142.0
Stre9g01434 . 308 1083 Core DNA Replication Machinery family AT5G63960 28.0 1.21e-90 318.0
Stre9g00215 . 3 716 Core DNA Replication Machinery family AT4G02060 82.773 0.0 1255.0
Stre9g01393 . 14 286 Core DNA Replication Machinery family AT1G21690 28.0 3.46e-15 76.6
Stre9g00049 . 12 332 Core DNA Replication Machinery family AT1G63160 89.408 0.0 603.0
Stre9g02756 . 464 564 Core DNA Replication Machinery family AT5G08020 24.786 4.32e-06 45.8
Stre9g03288 . 1 577 Core DNA Replication Machinery family AT2G06510 68.804 0.0 825.0
Stre9g01181 . 1 277 Core DNA Replication Machinery family AT3G02920 43.206 4.83e-71 218.0
Stre9g01402 . 14 286 Core DNA Replication Machinery family AT1G21690 28.0 6.63e-15 75.9
Stre9g02904 . 342 591 Core DNA Replication Machinery family AT5G22010 23.203 1.73e-12 70.1
Stre9g02754 . 227 437 Core DNA Replication Machinery family AT4G19130 21.127 2.35e-08 54.3
Stre9g00518 . 20 928 Core DNA Replication Machinery family AT1G44900 74.457 0.0 1337.0
Stre1g02101 . 1 790 Core DNA Replication Machinery family AT1G08130 65.099 0.0 1026.0
Stre1g01988 . 396 610 Core DNA Replication Machinery family AT5G22010 27.984 1.10e-14 75.9
Stre1g01243 ACH 1010 1267 Core DNA Replication Machinery family AT1G08840 30.357 2.84e-21 98.6
Stre1g02462 . 1 439 Core DNA Replication Machinery family AT2G42120 75.399 0.0 702.0
Stre1g02094 . 1 790 Core DNA Replication Machinery family AT1G08130 65.223 0.0 1026.0
Stre1g02745 WGDA 1 562 Core DNA Replication Machinery family AT2G31270 37.182 1.30e-89 285.0
Stre1g03329 ACH 1015 1267 Core DNA Replication Machinery family AT1G08840 31.599 3.25e-20 95.1
Stre1g03330 ACH 1013 1267 Core DNA Replication Machinery family AT1G08840 28.0 1.30e-15 80.1
Stre1g04989 . 1 318 Core DNA Replication Machinery family AT5G26680 24.551 4.38e-16 78.6
Stre1g01348 . 355 466 Core DNA Replication Machinery family AT4G19130 24.348 2.90e-06 44.7
Stre1g03997 . 1 275 Core DNA Replication Machinery family AT2G24490 43.571 3.47e-73 224.0
Stre1g01596 . 11 1522 Core DNA Replication Machinery family AT5G67100 50.881 0.0 1359.0
Stre1g01941 . 44 175 Core DNA Replication Machinery family AT1G79150 37.681 2.72e-14 67.0
Stre1g00394 . 1 209 Core DNA Replication Machinery family AT3G12530 57.895 7.58e-89 258.0
Stre1g01249 ACH 1004 1267 Core DNA Replication Machinery family AT1G08840 30.466 6.55e-21 97.8
Stre1g04010 . 1 279 Core DNA Replication Machinery family AT2G24490 42.958 7.38e-75 228.0
Stre1g03648 . 29 1095 Core DNA Replication Machinery family AT5G63960 81.937 0.0 1845.0
Stre1g02470 . 1 439 Core DNA Replication Machinery family AT2G42120 75.626 0.0 703.0
Stre1g01974 . 435 594 Core DNA Replication Machinery family AT1G79150 56.875 7.31e-56 186.0
Stre1g05036 . 2 972 Core DNA Replication Machinery family AT1G77320 49.194 0.0 877.0
Stre1g01247 ACH 996 1267 Core DNA Replication Machinery family AT1G08840 29.617 2.14e-21 99.4
Stre10g00540 . 888 1282 Core DNA Replication Machinery family AT1G08840 30.493 6.40e-38 151.0
Stre10g00020 . 19 252 Core DNA Replication Machinery family AT5G26680 29.832 2.02e-18 85.9
Stre10g02778 . 9 748 Core DNA Replication Machinery family AT3G09660 65.183 0.0 965.0
Stre10g00545 . 888 1283 Core DNA Replication Machinery family AT1G08840 30.493 1.82e-37 152.0
Stre10g02886 . 934 1289 Core DNA Replication Machinery family AT1G08840 26.598 2.32e-23 104.0
Stre10g02880 . 934 1289 Core DNA Replication Machinery family AT1G08840 26.598 3.45e-23 104.0
Stre10g01937 . 1 451 Core DNA Replication Machinery family AT5G41880 63.239 0.0 602.0
Stre11g01266 . 1 267 Core DNA Replication Machinery family AT5G26680 26.217 6.02e-15 75.9
Stre11g01930 . 525 568 Core DNA Replication Machinery family AT2G07690 52.273 4.76e-06 43.1
Stre11g00476 . 879 1288 Core DNA Replication Machinery family AT1G08840 31.466 1.81e-48 181.0
Stre11g01182 . 1 1294 Core DNA Replication Machinery family AT1G08840 54.368 0.0 1395.0
Stre11g00721 . 70 130 Core DNA Replication Machinery family AT1G79150 44.262 1.01e-07 50.8
Stre11g01939 . 525 568 Core DNA Replication Machinery family AT2G07690 52.273 4.76e-06 43.1
Stre11g01312 . 11 231 Core DNA Replication Machinery family AT1G21690 23.077 1.43e-06 48.9
Stre11g00726 . 70 130 Core DNA Replication Machinery family AT1G79150 44.262 1.06e-07 50.4
Stre11g00585 . 289 363 Core DNA Replication Machinery family AT1G79150 62.667 1.24e-28 105.0
Stre11g01715 ACH 48 142 Core DNA Replication Machinery family AT1G79150 39.0 4.55e-10 53.1
Stre4g01832 . 161 776 Core DNA Replication Machinery family AT1G08130 40.0 2.71e-169 523.0
Stre4g01909 WGDA 2 349 Core DNA Replication Machinery family AT5G27740 36.827 1.65e-77 251.0
Stre4g02806 . 997 1289 Core DNA Replication Machinery family AT1G08840 30.868 1.84e-21 100.0
Stre4g02396 . 3 287 Core DNA Replication Machinery family AT1G21690 25.574 7.36e-16 78.2
Stre4g01597 . 135 212 Core DNA Replication Machinery family AT1G67320 48.718 3.38e-17 73.2
Stre4g02752 . 135 212 Core DNA Replication Machinery family AT1G67320 48.718 3.38e-17 73.2
Stre4g01493 . 2 220 Core DNA Replication Machinery family AT5G49010 52.273 2.15e-74 223.0
Stre4g00416 . 1 601 Core DNA Replication Machinery family AT5G08020 66.998 0.0 861.0
Stre4g00557 . 9 321 Core DNA Replication Machinery family AT1G21690 21.813 4.95e-11 63.5
Stre4g02459 . 288 333 Core DNA Replication Machinery family AT2G01120 69.565 1.63e-16 73.6
Stre4g00272 . 350 613 Core DNA Replication Machinery family AT4G19130 26.259 2.59e-11 62.4
Stre4g01198 . 227 602 Core DNA Replication Machinery family AT4G19130 22.715 3.81e-11 63.5
Stre2g03254 . 66 196 Core DNA Replication Machinery family AT5G67100 39.098 2.33e-14 68.2
Stre2g01445 . 4 417 Core DNA Replication Machinery family AT2G01120 62.077 0.0 538.0
Stre2g05808 . 1014 1294 Core DNA Replication Machinery family AT1G08840 30.169 1.33e-18 90.5
Stre2g02809 . 25 733 Core DNA Replication Machinery family AT5G16690 44.398 0.0 578.0
Stre2g02810 . 21 847 Core DNA Replication Machinery family AT2G16440 70.843 0.0 1164.0
Stre2g00553 . 1 369 Core DNA Replication Machinery family AT1G77470 76.738 0.0 575.0
Stre2g02236 . 12 363 Core DNA Replication Machinery family AT2G37560 65.156 1.06e-174 488.0
Stre2g04740 WGDA 2 349 Core DNA Replication Machinery family AT5G27740 36.932 9.19e-75 244.0
Stre2g03647 ACH,WGDA 245 341 Core DNA Replication Machinery family AT4G14700 32.323 7.87e-10 56.2
Stre2g00484 . 18 83 Core DNA Replication Machinery family AT5G26680 67.647 1.25e-22 88.2
Stre2g03304 . 14 646 Core DNA Replication Machinery family AT2G14050 67.593 0.0 892.0
Stre2g00506 . 1 359 Core DNA Replication Machinery family AT5G26680 83.844 0.0 644.0
Stre2g04774 . 1 339 Core DNA Replication Machinery family AT1G21690 59.58 2.35e-136 390.0
Stre2g02635 . 181 234 Core DNA Replication Machinery family AT5G22110 40.0 1.18e-07 45.4
Stre2g03298 . 113 646 Core DNA Replication Machinery family AT2G14050 75.14 0.0 833.0
Stre2g02799 . 21 847 Core DNA Replication Machinery family AT2G16440 70.723 0.0 1162.0
Stre2g00875 . 1 843 Core DNA Replication Machinery family AT5G45400 48.832 0.0 766.0
Stre2g02800 . 25 733 Core DNA Replication Machinery family AT5G16690 44.398 0.0 575.0
Stre2g04870 . 175 588 Core DNA Replication Machinery family AT1G79150 52.038 4.62e-136 414.0
Stre2g04139 . 16 809 Core DNA Replication Machinery family AT4G14700 62.007 0.0 999.0
Stre2g03026 . 180 269 Core DNA Replication Machinery family AT1G77320 41.935 7.41e-13 69.7
Stre8g03379 . 227 662 Core DNA Replication Machinery family AT4G19130 22.973 1.66e-13 70.9
Stre8g03244 . 1014 1229 Core DNA Replication Machinery family AT1G08840 28.571 2.91e-13 71.6
Stre8g00824 . 35 504 Core DNA Replication Machinery family AT1G07270 57.053 0.0 538.0
Stre8g01966 . 299 542 Core DNA Replication Machinery family AT5G45400 23.755 9.14e-06 46.2
Stre8g03242 . 1015 1229 Core DNA Replication Machinery family AT1G08840 27.897 3.93e-13 70.9
Stre8g00452 WGDA 12 560 Core DNA Replication Machinery family AT2G31270 38.435 1.65e-86 276.0
Stre8g02743 . 1 282 Core DNA Replication Machinery family AT1G26840 63.86 2.31e-125 357.0
Stre8g02599 . 1 444 Core DNA Replication Machinery family AT1G67320 68.736 0.0 658.0
Stre8g03240 . 1015 1269 Core DNA Replication Machinery family AT1G08840 29.348 5.37e-18 89.7
Stre8g03162 ACH 1015 1267 Core DNA Replication Machinery family AT1G08840 30.337 6.74e-19 92.8
Stre8g03165 ACH 1015 1269 Core DNA Replication Machinery family AT1G08840 31.481 2.06e-20 97.8
Stre8g02959 . 5 149 Core DNA Replication Machinery family AT3G55490 41.722 9.05e-25 94.0
Stre8g03168 ACH 1007 1267 Core DNA Replication Machinery family AT1G08840 30.435 6.34e-19 91.3
Stre8g02736 WGDA 1 282 Core DNA Replication Machinery family AT1G26840 63.86 1.88e-125 357.0
Stre3g02564 . 99 337 Core DNA Replication Machinery family AT5G45400 31.174 1.81e-23 95.9
Stre3g02561 . 1 831 Core DNA Replication Machinery family AT5G45400 46.336 0.0 731.0
Stre3g02308 . 141 251 Core DNA Replication Machinery family AT5G26680 37.838 3.49e-13 71.6
Stre3g02839 . 91 296 Core DNA Replication Machinery family AT2G25100 69.856 3.38e-108 311.0
Stre3g02075 . 40 255 Core DNA Replication Machinery family AT1G77470 26.809 1.26e-09 58.2
Stre3g02563 . 400 831 Core DNA Replication Machinery family AT5G45400 47.973 5.15e-133 400.0
Stre3g02646 WGDA 1 354 Core DNA Replication Machinery family AT5G27740 87.006 0.0 660.0
Stre3g02848 . 91 296 Core DNA Replication Machinery family AT2G25100 69.856 1.90e-108 311.0
Stre3g01203 ACH,WGDA 245 341 Core DNA Replication Machinery family AT4G14700 32.323 7.73e-10 56.2
Stre3g02176 . 112 199 Core DNA Replication Machinery family AT4G02110 42.697 8.16e-16 77.4
Stre5g02867 . 1 201 Core DNA Replication Machinery family AT1G80190 53.234 7.01e-79 232.0
Stre5g00300 ACH 1 801 Core DNA Replication Machinery family AT1G79150 55.366 0.0 872.0
Stre5g00366 . 422 455 Core DNA Replication Machinery family AT2G16440 58.824 9.87e-08 46.6
Stre5g00222 WGDA 1 250 Core DNA Replication Machinery family AT1G26840 66.27 1.90e-119 342.0
Stre5g01192 . 350 556 Core DNA Replication Machinery family AT5G61000 25.0 3.14e-06 46.2
Stre7g01092 . 48 573 Core DNA Replication Machinery family AT1G79150 48.593 2.02e-151 455.0
Stre7g00250 . 17 396 Core DNA Replication Machinery family AT2G20980 41.162 6.46e-75 234.0
Stre7g02926 . 178 809 Core DNA Replication Machinery family AT4G14700 69.315 0.0 918.0
Stre7g01255 . 1 2005 Core DNA Replication Machinery family AT1G08260 66.504 0.0 2746.0
Stre7g02875 WGDA 1 354 Core DNA Replication Machinery family AT5G27740 87.288 0.0 659.0
Stre7g01984 . 231 602 Core DNA Replication Machinery family AT4G19130 23.36 4.84e-12 66.2
Stre7g01045 . 883 1105 Core DNA Replication Machinery family AT1G08840 28.169 6.54e-20 93.6
Stre7g00621 . 534 944 Core DNA Replication Machinery family AT5G22010 60.096 1.89e-170 500.0
Stre7g00604 . 183 944 Core DNA Replication Machinery family AT5G22010 66.407 0.0 970.0
Stre7g01299 . 1 124 Core DNA Replication Machinery family AT1G09815 53.175 1.31e-44 139.0
Stre7g01601 . 18 526 Core DNA Replication Machinery family AT5G22110 66.992 0.0 709.0
Stre7g02929 . 9 809 Core DNA Replication Machinery family AT4G14700 61.803 0.0 1001.0
Stre6g01657 . 176 269 Core DNA Replication Machinery family AT1G77320 34.021 2.73e-08 54.7
Stre6g03235 . 29 349 Core DNA Replication Machinery family AT5G27740 31.988 8.57e-49 170.0
Stre6g02918 . 1 773 Core DNA Replication Machinery family AT5G46280 67.771 0.0 1069.0
Stre6g00890 . 227 465 Core DNA Replication Machinery family AT4G19130 21.311 6.63e-07 50.4
Stre6g00720 . 435 673 Core DNA Replication Machinery family AT1G79150 51.464 3.38e-74 238.0
Stre6g00719 . 126 382 Core DNA Replication Machinery family AT1G79150 56.923 4.76e-94 295.0
Stre6g02067 . 887 1269 Core DNA Replication Machinery family AT1G08840 27.208 7.11e-30 126.0
Stre6g02522 WGDA 1072 1328 Core DNA Replication Machinery family AT4G02110 60.967 8.72e-107 368.0
Stre6g02664 . 1 359 Core DNA Replication Machinery family AT5G26680 83.844 0.0 644.0
Stre6g01032 . 887 1100 Core DNA Replication Machinery family AT1G08840 28.261 6.55e-10 60.1
Stre6g02754 . 1 275 Core DNA Replication Machinery family AT5G26680 25.714 1.88e-16 80.9
Stre6g00251 ACH 248 333 Core DNA Replication Machinery family AT4G12620 31.395 5.34e-09 53.9
Stre6g02993 . 1 601 Core DNA Replication Machinery family AT5G08020 66.389 0.0 848.0
Stre6g01464 . 1 727 Core DNA Replication Machinery family AT2G07690 78.065 0.0 1166.0
Stre6g02176 . 1 596 Core DNA Replication Machinery family AT3G25100 69.616 0.0 842.0
Stre6g03109 . 4 534 Core DNA Replication Machinery family AT4G29910 56.192 0.0 578.0
Stre6g01622 . 531 778 Core DNA Replication Machinery family AT1G08130 28.159 2.19e-25 108.0
Stre6g01838 ACH,WGDA 1 98 Core DNA Replication Machinery family AT4G18590 54.082 3.00e-34 112.0
Stre6g00352 . 299 513 Core DNA Replication Machinery family AT5G45400 24.091 8.62e-08 52.4
leaf

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Stre BAH 2.3e-22 No_clan TR PHD