AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre6g00272 ATGTCACCACTAATCACACATCTAATCCCAATACTTTTACTTCTAATTCATCCACACCCTACAGTCGCCGATCAATCATTCATCTCGGTGCTGATAACCCAAAACGGCCTCGATTTCGTTAAGAATCTGCTCGTAACGAAAGCAATTTCTAAAATCAATCCAACCCCACTGTCAAAAATCGATAGTGTTGTTAATATCCCTGTGATCGGTAAAGTGCATGTTGTTCTTTCAGATATCACAATTTACCGGTTTAATGTCGGATTATCGGAAGTTATACCACGTGTCACCAGTGTCACCATTGATGGATCAGATGTTACCTGTGATTTTAGTATGAAATGGCATTATTCTTATGGTTCTTCGCTTTTTCCGATTTCGATTGCGGATAGTGGAACTGCTGCTATTGAGGTTAATGGCATGAAGATGGTGGTGACATTGGGTTTGAATATTCTAGAAGGATCCATGAAACTTTGCAACATAAAATGTACATGTCATATACATGATATTTCCATAGATCTAGATGGAGGTTCATCTTGGCTCTATCAAGGGATTTTGGATGCATTCAAAGAAGAAATAGTGTCAGTTGTTGAATATTCAATAACCAAAATATTAAATACTGAAATTAAAAAACTTGGATTACTTCTACAAAGTCTTCCAAAACAAATTCCAGTTGATCATATAGCTTCATTAAATGTTACATTTGTTAATAACCCTTTATTAAGTGACACGTCATTAGGGTTTGAAATAAACGGGTTATTTATAGATAATAAAACCGATACACGATCATATGCAAACAATTTGCAGCCATCTGTTCGTTGTTCAAATCCTGCAAAAATGATTGGAATTGCGGTTGATGAAGCGGTTTTCAGATCTGCATTCGCCTTATACTACAATGCTATGTTTATGCATTGGATTGTGGATAAAATTCCTCAACAAAATCTTTTGAACACAGCAGGATGGAGATTTATTGTTCCTGAACTCTACAGAAAATTTCCAAATAATAATATGAATTTAAATATATCGTTATCTGATCCACCAGCTTTGCAGATATCATTGCAGAAAATTGATGCTACTATTTATGCGGATTTAATTATAAATGTTCTCGACAGACATGACACAATACCCGTTGCTTGTATCTCATTGGTAATTACTGGCATGAGTTCGGTTCAAATTACCGAAAATAACCTTGCTGCTCATTTGAAAATGGATGATTTTACCATGTCATTAAAATGGAGCAAAATTGGCACCTTGCATATGTTTCTAATTCAGCCGGTGATGTGGACACTAATTGAAACTGTTTTCATGCCATATGTAAATGCCCGTGTTGGGATTGGGTTCCCTTTGCCTTTAATTAACGGGTTTATGCTTGAAAATGCTGAGATAATAACCTCGGATTCTAGAATTACTGTCTGCAGTGATGTTACATACCGAGAACCGTTTGATGGTATCCAAGTGTACACTTCATAG 1464 35.93 MSPLITHLIPILLLLIHPHPTVADQSFISVLITQNGLDFVKNLLVTKAISKINPTPLSKIDSVVNIPVIGKVHVVLSDITIYRFNVGLSEVIPRVTSVTIDGSDVTCDFSMKWHYSYGSSLFPISIADSGTAAIEVNGMKMVVTLGLNILEGSMKLCNIKCTCHIHDISIDLDGGSSWLYQGILDAFKEEIVSVVEYSITKILNTEIKKLGLLLQSLPKQIPVDHIASLNVTFVNNPLLSDTSLGFEINGLFIDNKTDTRSYANNLQPSVRCSNPAKMIGIAVDEAVFRSAFALYYNAMFMHWIVDKIPQQNLLNTAGWRFIVPELYRKFPNNNMNLNISLSDPPALQISLQKIDATIYADLIINVLDRHDTIPVACISLVITGMSSVQITENNLAAHLKMDDFTMSLKWSKIGTLHMFLIQPVMWTLIETVFMPYVNARVGIGFPLPLINGFMLENAEIITSDSRITVCSDVTYREPFDGIQVYTS 487
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre6g00272 487 PANTHER OS06G0309200 PROTEIN 9 478 IPR045897 -
Stre6g00272 487 PIRSF Lipid-binding-protein 6 480 IPR030675 GO:0005615(InterPro)|GO:0008289(InterPro)
Stre6g00272 487 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 244 475 IPR017943 GO:0008289(InterPro)
Stre6g00272 487 Pfam LBP - BPI - CETP family, C-terminal domain 273 475 IPR001124 GO:0008289(InterPro)
Stre6g00272 487 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 29 240 IPR017943 GO:0008289(InterPro)
Stre6g00272 487 SMART bpi2-2 273 471 IPR001124 GO:0008289(InterPro)
Stre6g00272 487 Gene3D - 29 462 - -
Stre6g00272 487 Gene3D - 35 215 - -
Stre6g00272 487 Pfam LBP - BPI - CETP family, N-terminal domain 36 207 IPR017942 GO:0008289(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre6g00272 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr5:96320640 Stre6g00272 Stre-Chr6:7525006 dispersed