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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre6g00290 ATGGCAATAACTATTATTCTACTTTATTATTTTGTTCCATCTCATTTTAGTTTATCATATGCTCTAACATGCTCAAATCACAAATTCACAACTAAAGGAGTCTACACCTCTTGTAAAGATCTTCCTCATTTATCATCTCAACTTCATTGGACCTACAACTCAACCATGGGTGTAGCCAACATCGCGTATCGGGCCCGACAAAGGCCCAATGGTTGGGTTGCATGGGCCATCAACCCAAACCAGATAGGTATGGTTGGGTCAGAAGCATTGATGGCTTTTGTGAATGGTAATGGAACTATGACGGTATATCCAACGATGATAACTAGTTACAGCCCATCAATGCAACCCGCCGATCTTAGCTTTCAGGTTTCGGGTCTTTCGGCTGAGTTTTTGAATAATGAAATTACCATTTTTGCTACCGTGGGCCCGTTTGGAGGCGGGTCGGTTGTTAATCAAGTATGGCAAGCTGGAAATTTGGTGGTTGATGGTGTTCCTCAAATGCATGCGGTTTCACAACAAAATCTTCAATCAACAGGAGAACTTGATTTTTTATTTGGTTAA 561 41.18 MAITIILLYYFVPSHFSLSYALTCSNHKFTTKGVYTSCKDLPHLSSQLHWTYNSTMGVANIAYRARQRPNGWVAWAINPNQIGMVGSEALMAFVNGNGTMTVYPTMITSYSPSMQPADLSFQVSGLSAEFLNNEITIFATVGPFGGGSVVNQVWQAGNLVVDGVPQMHAVSQQNLQSTGELDFLFG 186
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre6g00290 186 CDD DOMON-CIL1-like 35 184 IPR045265 -
Stre6g00290 186 PANTHER CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN 5 184 - -
Stre6g00290 186 Pfam Protein of unknown function (DUF568) 84 183 IPR045265 -
Stre6g00290 186 ProSiteProfiles DOMON domain profile. 44 157 IPR005018 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre6g00290 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
160585 Stre6g00290 Stre9g02817
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr1:135690020 Stre6g00290 Stre-Chr6:7904770 dispersed
Stre Stre-Chr6:7904770 Stre9g02817 Stre-Chr9:92218402 dispersed
Stre Stre-Chr6:7904770 Stre4g00326 Stre-Chr4:48985082 transposed
Stre Stre-Chr6:7904770 Stre4g00304 Stre-Chr4:47886950 transposed