AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre6g00291 ATGTTTCATCAAACCCCAATTCCCCAAATTCAAACGATGACTCCGACACCCATTGTTCATCACAGTAATCCAGATCAGATCGTTAACCCAATTCGCACTTCAGGTGAAATTCATGTTATTGTGGGTCCAATGTTTGCCGGTAAAACCACAGCTCTTCTTCGCAGGATCAAATCTGAAGGAACTAACGGCAGGAATATTGCACTTATAAAATCAAACAAAGATACGCGATACGCGATTGATTCGGTTGTAACCCATGATGGAACAAAGTATCCATGTTGGGCACTGCCTGATTTGTTGTCCTTCAAACAAAAACTTGGAGAAGAAGAGTATGAAAAGTTGGATGTTATTGGGATTGATGAAGCACAATTCTTTGATGATTTATATGACTTTTGTTGCAAAGCTGCTGATCATGATGGAAAAACACTTATAGTTGCTGGTCTTGATGGTGATTACTTAAGAAAGAACTTTGGTCCAGTGCTTGATATAATACCTATTGCTGACACAATATCTAAATTAACCGCCAGATGCGAGTTATGCGGCAAACGGGCCCATTTCACCTTCAGGAAAACTAACGAAACAGAAACCGAACTTATCGGTGGGGCCGATATGTATATGCCTGTTTGTCGACAACATTATGTTAACGGGCATGTGGTGAAGAAAACCGTTGGTTGA 672 40.48 MFHQTPIPQIQTMTPTPIVHHSNPDQIVNPIRTSGEIHVIVGPMFAGKTTALLRRIKSEGTNGRNIALIKSNKDTRYAIDSVVTHDGTKYPCWALPDLLSFKQKLGEEEYEKLDVIGIDEAQFFDDLYDFCCKAADHDGKTLIVAGLDGDYLRKNFGPVLDIIPIADTISKLTARCELCGKRAHFTFRKTNETETELIGGADMYMPVCRQHYVNGHVVKKTVG 223
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre6g00291 223 ProSitePatterns Thymidine kinase cellular-type signature. 199 212 IPR020633 GO:0004797(InterPro)|GO:0005524(InterPro)
Stre6g00291 223 FunFam Thymidine kinase 31 172 - -
Stre6g00291 223 Gene3D - 173 214 - -
Stre6g00291 223 Pfam Thymidine kinase 35 212 IPR001267 GO:0004797(InterPro)|GO:0005524(InterPro)
Stre6g00291 223 FunFam Thymidine kinase 173 215 - -
Stre6g00291 223 PIRSF Tdk 32 222 IPR001267 GO:0004797(InterPro)|GO:0005524(InterPro)
Stre6g00291 223 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 173 215 - -
Stre6g00291 223 Gene3D - 28 172 IPR027417 -
Stre6g00291 223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 173 IPR027417 -
Stre6g00291 223 PANTHER THYMIDINE KINASE 31 220 IPR001267 GO:0004797(InterPro)|GO:0004797(PANTHER)|GO:0005524(InterPro)|GO:0046104(PANTHER)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre6g00291 K00857 thymidine kinase [EC:2.7.1.21]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr5:110978421 Stre6g00291 Stre-Chr6:7906384 dispersed
Stre Stre-Chr6:7906384 Stre5g03163 Stre-Chr5:111045345 dispersed
Stre Stre-Chr6:7906384 Stre9g01647 Stre-Chr9:29146795 wgd