AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre6g00312 ATGAGTGGGGCTAGGGTTTCCATTCCAAACAATGTAAGGAAGACGATCCAAAACATCAAGGAGATCACAGGTAATCACAGTGAAGATGAGATATATGCAATGCTTAAAGATTGTTCCATGGATCCGAACGAGACCGCTCAAAAGCTCCTTTTTCAAGATCCATTTCATGAAGTTAAAAGGAAGCGTGACCGCAAAAAAGAGAATTTGAATAAAGAAACTACAGAGTCAAGATTGAAACCTGGGATGCAGGGAAGGGGGAATAGAGGTGGCAGGTTGAACTACTCATCTCGTCGCATTTCTAATGACGTAGGTGGCGGCAGGAAACCACTTTCTGCAAAGGAAAATGGCACGACTAAATTTGGAGATGTTGGTCAAAATCAGTCAACGCTTCACGGTCAGAAGAATAAAGAAACATTTGTGACTAAAAGTTCTTCGAGTGTTGTACCTGATGGGATTGAACATTCGTTGGTGGGAAGTGATGAGAAGAAATCTGAAGTGGTCCCCACTGCTGATGATAGTGTACGTGGGTCCCTCATTTCGAGCACTAATGACACATCAGCTTCTAAGACACCATTACCTTCACCAGGGGTATATTTGTCCGATAAAGATCCTATTCTGATGCCTTCACAAGATTCACGGTTCCCTGTTGGTACAATCAAACGTGAAATTGGGAGTCAACAAACTCCAGTTGACCAAATTCACGAGACCCCCCTTGTGATTGAATCAACTGCATCTGGTTCTGAGGTTGGAAATTCTTCCATGCAAGGGAAGTTAACATCTTCTCATGTCACATTTTCCACTTCGAGACCTTCTTCAAACTATAATAATAAGATGCAACAAGCAATTGGGCCTCAAAAAGTTGGTCCAAATATGGAATGGAAACCAAAACCAACAAATCCAATTCTTACTCAAAGAATCGAGTTAACCGATCCAATTGAGGTGCACGTGGTTCAACCTGAAAGTCAAACTCCAGACGCGTTTGCAGACCAAAATCTTGATTCAAATAAAACAATGCACGCGCTAGTGAAGAAGCTAGAGGAATCACATATTTCAGTTGATCAACATGTTATTCTTCCTAATCATCTTCATGTTCCTGAACCTGAAAAACTCGGGTTTTACTTTGGGAGTTTTGATACCGGTTTTAGTTTCAATGCAACCTCCTCAAATGGGCCTGGGCCTGGGCCTGGGATTGGGCCTGTGAGTGACAAGAGTTCTGAGGCTTCTGAGGTGGTTGATGAAAGTATAGATGAGCAGCACAGAAATCAAAACAATGATTTGGCAAGTGGTGATGATGAAGATCATCCATCATCATCATCCAATAACATACCCGAGAATTTATCAGCCGAAGGTGATGTGTCATCAAATTCGGGTCTCGATTACCATGAAACCAAACACGAGACTTCACTTCCAACCACAAGCCATCAATACCCGATTCTTCAAACATCTCCTAACTTCAATTTTGGGTTTATTCCACCAATGATTGGGACCCACATCGCATCGTTTGAAACCAACGAGTCTCATAGTCATGATGGTCCTCAAATCCCAAATTTTGTTCAGCAACAATTTGACCCAGCAAGCTATTATGCTCAATTTTATCGTTCTGGTGCTGATGTGGATGGCCGGATATCACCCTTTAATTCAACCGGGCTTCCAACCAAATTTAATGGAAATATTCCCGTTTTACCCCCACGGCCTTCTCATTCTTCTCAAGAGGTTGGGAACTCACTAATGTTATCTGTTACTGGTTCAACACCAATAACCACCACACAACCCGGTGGATTCATGCAAACCTCCATACCCATAACCCAGCAACCCGTACCCGTTTTCAGACAACCAACCGGTGTTCATTTACCACATTACCCTCCAAATTACATCCCATATGCTCCGTTTTTCTCCCCATTTTATGTTCCTCCACAAGCTCTTCATCAATTTTTAAGTAATAATAATACATTCCCACAACAACCTCAAGCTGGTAACATGTACCCGGGCCCACCAGTTGCAAGCCCTAAATACCCACCTCCACAATACAAAACGGGTCAAAATAACCCGGTTAATATTGGAATGCCCGGAAACTATGGACCGTATGGCTTAAACCCTCGTGGCTATAATCCTGGTTCGGTTGGTATAGCTGGCAATTCGACCCCCGATGATGACATCAGCGGGTCCCAGTTTAAGGAAAGTAATGTTTACGTTACTGGACAACAGAGTGAAGGATCGGGCGTATGGATGGCTTCACCAGGTCGAGACATATCGGGTTTGCAAGCTAATTCTTTCTACAACATTCCTCAAAGTGGTCAAGTTGCGTATACGCCACCACAAGTCAACCATGGGACTTTTGCTAGTCTTTACCACCACCCGGGTCAACCCGTAACCACCGGTGCGGTTCACCCACTTCTCCAACAGTCTCAATCACCGGCTGGACCCACACCACAGATCAATTGGCCTAATAACTACTGA 2457 43.67 MSGARVSIPNNVRKTIQNIKEITGNHSEDEIYAMLKDCSMDPNETAQKLLFQDPFHEVKRKRDRKKENLNKETTESRLKPGMQGRGNRGGRLNYSSRRISNDVGGGRKPLSAKENGTTKFGDVGQNQSTLHGQKNKETFVTKSSSSVVPDGIEHSLVGSDEKKSEVVPTADDSVRGSLISSTNDTSASKTPLPSPGVYLSDKDPILMPSQDSRFPVGTIKREIGSQQTPVDQIHETPLVIESTASGSEVGNSSMQGKLTSSHVTFSTSRPSSNYNNKMQQAIGPQKVGPNMEWKPKPTNPILTQRIELTDPIEVHVVQPESQTPDAFADQNLDSNKTMHALVKKLEESHISVDQHVILPNHLHVPEPEKLGFYFGSFDTGFSFNATSSNGPGPGPGIGPVSDKSSEASEVVDESIDEQHRNQNNDLASGDDEDHPSSSSNNIPENLSAEGDVSSNSGLDYHETKHETSLPTTSHQYPILQTSPNFNFGFIPPMIGTHIASFETNESHSHDGPQIPNFVQQQFDPASYYAQFYRSGADVDGRISPFNSTGLPTKFNGNIPVLPPRPSHSSQEVGNSLMLSVTGSTPITTTQPGGFMQTSIPITQQPVPVFRQPTGVHLPHYPPNYIPYAPFFSPFYVPPQALHQFLSNNNTFPQQPQAGNMYPGPPVASPKYPPPQYKTGQNNPVNIGMPGNYGPYGLNPRGYNPGSVGIAGNSTPDDDISGSQFKESNVYVTGQQSEGSGVWMASPGRDISGLQANSFYNIPQSGQVAYTPPQVNHGTFASLYHHPGQPVTTGAVHPLLQQSQSPAGPTPQINWPNNY 818
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre6g00312 818 PANTHER FLOCCULATION PROTEIN (DUF1296) 1 813 IPR044277 GO:0051082(PANTHER)
Stre6g00312 818 MobiDBLite consensus disorder prediction 174 193 - -
Stre6g00312 818 MobiDBLite consensus disorder prediction 55 74 - -
Stre6g00312 818 MobiDBLite consensus disorder prediction 118 150 - -
Stre6g00312 818 MobiDBLite consensus disorder prediction 406 432 - -
Stre6g00312 818 MobiDBLite consensus disorder prediction 433 457 - -
Stre6g00312 818 Coils Coil 55 75 - -
Stre6g00312 818 MobiDBLite consensus disorder prediction 155 169 - -
Stre6g00312 818 MobiDBLite consensus disorder prediction 385 476 - -
Stre6g00312 818 SUPERFAMILY UBA-like 8 70 IPR009060 GO:0005515(InterPro)
Stre6g00312 818 MobiDBLite consensus disorder prediction 55 194 - -
Stre6g00312 818 Pfam GBF-interacting protein 1 N-terminal 8 67 IPR009719 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre6g00312 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
159635 Stre2g03703 Stre6g00312
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr4:112110629 Stre6g00312 Stre-Chr6:8315003 dispersed
Stre Stre-Chr4:112272913 Stre6g00312 Stre-Chr6:8315003 dispersed
Stre Stre-Chr6:8315003 Stre6g02909 Stre-Chr6:92160662 dispersed
Stre Stre-Chr2:139020384 Stre6g00312 Stre-Chr6:8315003 wgd