AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stre6g00371 | ATGCTTCGAGTTTTACAGATAGCGTCTTTCGTCGCCGGCCGACGACGAATAAGCACCACCGTAATGAGTTTCGGAGACGGTAGCCATGGTGCGCTAGGATTACCTACTTCTATCACCGGAATCGGTTCCGACGCATACGAACCAACTCCGATCTCAACCCTACCTCCGGATGTTTCCAGCATCGCCGCCGGTCACTACCACTCTCTCGCCGTTACATCTGACGGCCACCTCTGGTCATGGGGCCGGAATGTCGAACACCAGCTCGGCCGTGCCGTTAATTCCCCTAGAGAAACATGGGTTGAACCACAAAGGATAAACGGGTTGAGTGGGATCCGATCGGCATCTGCATCCGGTGTCGTATCGGCAGCGATTGGAATTGATGGATCGTTGTGGATTTGGGGCAAATCCAAACGTGGTCAGTTAGGGCTTGGAAATGGTATCACGGAATCCGTTCTTCCCTCAAGGATTAAAGTTATTGATAATGAAGAGATAATTAAGGTTTCATTTGGATGGGGACATGCTCTTGCATTAACCAAAGATGGAAAATTATTTGGTTGGGGTTATTCATCAGATGGTAGATTAGGAAAAAGAAGAATTATGGGTATTTCACAACTTGATTCAAATGCTAATTTGTCTTCAAGTTTGAACCTTGAAGATGCTGAAAAAGTGGTTTTGGAAGCTATGGATAAGGAGAATGATATGCCCATAATCTGGGAACCATGTTTAATCGATGAACTAAACGGTGTTGAAGTTGCTGATGTGTCATGTGGACTCGACCACACTTTGGTTCTTCTACGTGATGGAACCTTACTAAGTGGCGGAAGCAATACATATGGGCAATTAGGTAGATCAACACAAGATATGCAACTTCTTCCAGTTGATATAACCGTTTATCCCGTTTCCATTGCATCCGGTTTGGGTCATTCGTTAGCAATATGTCAAATCCCATCAGCAGACGGAGGCAGGGGCATTTCAGGAATTTATTCATGGGGTTGGGGTTTGAACTCTCAGCTCGGTCGGGTGGGTCCCACAAACATCCCATTGCCCGTGGATGGACTTTTAGGGGAAAACCCGGTGTCGGTTTCAGGCGGTCGTGTTCACTCAATTGCGGTCATGACCGGTGGTGAGGTTTTTTCATGGGGGTGTGGTAGAAATGGACGGCTCGGGTTAGGTGGTTCTGCAGATGAGCCTGAACCCATGTTGGTTGAGTTTTCAGAACCGGTTAATGTTCTGCAGGCGGTTGCAGGGTTTGATCATACTTTAGTTCTAACAAGTAGCTAA | 1281 | 46.99 | MLRVLQIASFVAGRRRISTTVMSFGDGSHGALGLPTSITGIGSDAYEPTPISTLPPDVSSIAAGHYHSLAVTSDGHLWSWGRNVEHQLGRAVNSPRETWVEPQRINGLSGIRSASASGVVSAAIGIDGSLWIWGKSKRGQLGLGNGITESVLPSRIKVIDNEEIIKVSFGWGHALALTKDGKLFGWGYSSDGRLGKRRIMGISQLDSNANLSSSLNLEDAEKVVLEAMDKENDMPIIWEPCLIDELNGVEVADVSCGLDHTLVLLRDGTLLSGGSNTYGQLGRSTQDMQLLPVDITVYPVSIASGLGHSLAICQIPSADGGRGISGIYSWGWGLNSQLGRVGPTNIPLPVDGLLGENPVSVSGGRVHSIAVMTGGEVFSWGCGRNGRLGLGGSADEPEPMLVEFSEPVNVLQAVAGFDHTLVLTSS | 426 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stre6g00371 | 426 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 181 | 267 | IPR000408 | - | |
| Stre6g00371 | 426 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 375 | 426 | IPR000408 | - | |
| Stre6g00371 | 426 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 17 | 425 | IPR051210 | - | |
| Stre6g00371 | 426 | Gene3D | - | 6 | 227 | IPR009091 | - | |
| Stre6g00371 | 426 | Gene3D | - | 228 | 426 | IPR009091 | - | |
| Stre6g00371 | 426 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 75 | 127 | IPR000408 | - | |
| Stre6g00371 | 426 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 58 | 87 | - | - | |
| Stre6g00371 | 426 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 251 | 280 | - | - | |
| Stre6g00371 | 426 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 375 | 423 | IPR000408 | - | |
| Stre6g00371 | 426 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 327 | 371 | IPR000408 | - | |
| Stre6g00371 | 426 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 127 | 177 | IPR000408 | - | |
| Stre6g00371 | 426 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 254 | 264 | IPR000408 | - | |
| Stre6g00371 | 426 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 128 | 180 | IPR000408 | - | |
| Stre6g00371 | 426 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 268 | 315 | IPR000408 | - | |
| Stre6g00371 | 426 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 325 | 374 | IPR000408 | - | |
| Stre6g00371 | 426 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 19 | 74 | IPR000408 | - | |
| Stre6g00371 | 426 | PRINTS | Chromosome condensation regulator RCC1 signature | 20 | 36 | IPR000408 | - | |
| Stre6g00371 | 426 | PRINTS | Chromosome condensation regulator RCC1 signature | 77 | 93 | IPR000408 | - | |
| Stre6g00371 | 426 | PRINTS | Chromosome condensation regulator RCC1 signature | 167 | 183 | IPR000408 | - | |
| Stre6g00371 | 426 | PRINTS | Chromosome condensation regulator RCC1 signature | 183 | 197 | IPR000408 | - | |
| Stre6g00371 | 426 | PRINTS | Chromosome condensation regulator RCC1 signature | 370 | 391 | IPR000408 | - | |
| Stre6g00371 | 426 | PRINTS | Chromosome condensation regulator RCC1 signature | 58 | 71 | IPR000408 | - | |
| Stre6g00371 | 426 | PRINTS | Chromosome condensation regulator RCC1 signature | 128 | 144 | IPR000408 | - | |
| Stre6g00371 | 426 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 61 | 71 | IPR000408 | - | |
| Stre6g00371 | 426 | SUPERFAMILY | RCC1-BLIP-II | 19 | 425 | IPR009091 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stre6g00371 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Stre | Stre-Chr6:9946518 | Stre9g02573 | Stre-Chr9:83636885 | dispersed | |
| Stre | Stre-Chr6:9946518 | Stre11g00052 | Stre-Chr11:1198682 | transposed | |
| Stre | Stre-Chr6:9946518 | Stre11g00041 | Stre-Chr11:988966 | transposed |