AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre6g00372 ATGGCCGACAAAATTGAAAAGACCGGTGATGTGGCAACCTCTGCACCCGGACCATGCCCGGAAGAAGATGGAAACTCCGGCATCCAGACGGCGGAGACACTCCTGAGACTGTTGCCGGTGGTGCTTTGTGTGGCGGCGTTAGTCGTTATGGTTAAGGATTCTGAGACGAATGAATATGGATCTTTATCATACTCTAATATCACTGCTTTCAGGTTTTTGGTGCATGCTAATGGTGTATTGGCGGGTTACTCGCTACTTTCAGCCGCTTTCATGGCAATACCTCGGCCTATGACCATGTCTCGAGCCTGGACCTTCTTTCTACTCGACCAGGTTTCAACATACTTGATACTGGCGGCGGGTGCAGTGGCAACAGAGGTGGCGTTCTTGACATACAATGGTGACGTGGCGGTTACTTGGAGTGAAGCATGTGGGACCTACGGCCACTTTTGTAGACGAGCAACAACATCTATCATCATCACCTTTGTGGTGATTATTTGCTACATTTTACTATCGTTAATCTCGTCGTATAGGCTCTTCAGCAAGTATGATGCACCAGTCGGGTATCGTAACAAGGGAATCGAGATCATTGACTTCGGGAATTGA 603 48.42 MADKIEKTGDVATSAPGPCPEEDGNSGIQTAETLLRLLPVVLCVAALVVMVKDSETNEYGSLSYSNITAFRFLVHANGVLAGYSLLSAAFMAIPRPMTMSRAWTFFLLDQVSTYLILAAGAVATEVAFLTYNGDVAVTWSEACGTYGHFCRRATTSIIITFVVIICYILLSLISSYRLFSKYDAPVGYRNKGIEIIDFGN 200
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre6g00372 200 PANTHER CASP-LIKE PROTEIN 4A4 29 180 - -
Stre6g00372 200 MobiDBLite consensus disorder prediction 1 25 - -
Stre6g00372 200 NCBIfam plant integral membrane protein TIGR01569 35 176 IPR006459 -
Stre6g00372 200 Pfam Casparian strip membrane protein domain 26 166 IPR006702 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre6g00372 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr2:177171319 Stre6g00372 Stre-Chr6:9952989 transposed
Stre Stre-Chr6:9952989 Stre9g01621 Stre-Chr9:28579652 wgd