AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stre6g00376 | ATGGAAGACGATAACTGCAACACACTCTCTCATCAAGACTCCGATCTCGATCTCAGCTTCACCAGCTCCACCTCAATCGCCACCACCAGTGCACGCTCGAGTCTCACACGTTCTAGCTTATGCCTCAGCTTCAACGATTCAACTCGCATCTCCTCCGTCTCAACCACCACAACTTCAACCGAAATCAAAAACCTCCACCGTCGTCCTCACCGGAAATCGGATTCCGACTGGTCCGCCATACGAGCTGCTACAAATCTCTCCTCCGACGGCAAGCTCCACCTCCACCACCTAAAGCTAATCCGTCACGTCGGATCTGGAAACCTCGGAAGAGTGTTTCTCTGCCGGCTTCGTGATTCCGATCACGCGAATTTTGCTCTGAAAGTTGTTGATAACAACTTGTTGACGTCGAAGAAGCTGTTGCAGGTGCAGACCGAGGCTCGGATCCTGTCTTCGCTGGACCACCCGTTCCTCCCTACGCTCTACGCGCATCTTGAAGCTTCTCACTACACGTGCTTCCTCATTGATTACTGTTCGAACGGAGATCTGCATTCATTGATGAAGAAGCAACCGAATTACCGGTTTCCGATTGATACCGTTAGGTTTTTCGCGGCAGAGGTGTTAGTAGCGCTTGAATACCTCCATTCGATCGGAATCGTGTACCGTGATTTGAAGCCTGAGAATGTTTTGATCCGTAACGACGGTCACATTATGTTATCGGATTTCGATTTATGCTTCAACGCCGACGTCGTTCCAAAGCTAGATAAACGGATTATTCAGAATGTAACACGCAAAACTCACCGGAATTGTTTCGGATTTTCCTGCAGAAGAAGCGGCAGACTTGGTGAAACAGAAACATTACCGGAGTTTGTGGCGGAGCCGACGACGGCGTTCTCGAGAGCATGTGTCGGAACACATGAATACCTGGCACCGGAGTTGATCACTGGCGACGGTCACGGCAATGGCGTCGACTGGTGGGCATTCGGAGTATTAATATACGAGTTGTTGTACGGAACGACGCCGTTTTGGGGGAGGAGTAAAGAATCCACCCTGCGCAATATAGCATCTGTGACAGTTAAGTTTGATGAAAACAACACGCGAGGAATGGCGCAGGCTAAGAACTTGATAGAAAAGTTGCTGATGAAAGATCCACGGGAGCGGCTAGGATGCGCCAGGGGTGCGACGGATATTAAACTTCACCCATTTTTCGCCGGAATTAAGTGGCCGTTGATCCGTATGTACCGGCCGCCGGAGGTACGGGGGCTGGCGGTGAACAAGGGTACCAAGGCGCATGTTAGTCACGTGGGCGGGTGGCCGTTGTACCAAAAGAAAAGGCGTTCGTTATGGAAGGGACTTATTAGTATATTGTTAAAAAGTAAGGAGGCCAAACGGTAA | 1392 | 50.29 | MEDDNCNTLSHQDSDLDLSFTSSTSIATTSARSSLTRSSLCLSFNDSTRISSVSTTTTSTEIKNLHRRPHRKSDSDWSAIRAATNLSSDGKLHLHHLKLIRHVGSGNLGRVFLCRLRDSDHANFALKVVDNNLLTSKKLLQVQTEARILSSLDHPFLPTLYAHLEASHYTCFLIDYCSNGDLHSLMKKQPNYRFPIDTVRFFAAEVLVALEYLHSIGIVYRDLKPENVLIRNDGHIMLSDFDLCFNADVVPKLDKRIIQNVTRKTHRNCFGFSCRRSGRLGETETLPEFVAEPTTAFSRACVGTHEYLAPELITGDGHGNGVDWWAFGVLIYELLYGTTPFWGRSKESTLRNIASVTVKFDENNTRGMAQAKNLIEKLLMKDPRERLGCARGATDIKLHPFFAGIKWPLIRMYRPPEVRGLAVNKGTKAHVSHVGGWPLYQKKRRSLWKGLISILLKSKEAKR | 463 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stre6g00376 | 463 | SMART | serkin-6 | 97 | 402 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Stre6g00376 | 463 | FunFam | Serine-threonine-protein kinase OXI1 | 296 | 420 | - | - | |
| Stre6g00376 | 463 | Gene3D | Transferase(Phosphotransferase) domain 1 | 181 | 246 | - | - | |
| Stre6g00376 | 463 | CDD | STKc-phototropin-like | 95 | 418 | - | - | |
| Stre6g00376 | 463 | ProSitePatterns | Serine-Threonine protein kinases active-site signature. | 218 | 230 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Stre6g00376 | 463 | Pfam | Protein kinase domain | 299 | 402 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Stre6g00376 | 463 | Pfam | Protein kinase domain | 99 | 246 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Stre6g00376 | 463 | PANTHER | FLIPPASE KINASE 1-RELATED | 34 | 421 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
| Stre6g00376 | 463 | ProSiteProfiles | Protein kinase domain profile. | 97 | 402 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Stre6g00376 | 463 | FunFam | Serine-threonine-protein kinase OXI1 | 181 | 249 | - | - | |
| Stre6g00376 | 463 | Gene3D | Transferase(Phosphotransferase) domain 1 | 299 | 412 | - | - | |
| Stre6g00376 | 463 | Gene3D | Phosphorylase Kinase; domain 1 | 95 | 180 | - | - | |
| Stre6g00376 | 463 | SUPERFAMILY | Protein kinase-like (PK-like) | 79 | 418 | IPR011009 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stre6g00376 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Stre | Stre-Chr6:10034697 | Stre9g02771 | Stre-Chr9:90765768 | dispersed | |
| Stre | Stre-Chr6:10034697 | Stre7g02261 | Stre-Chr7:93200591 | transposed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Stre9g02771 | . | 2 | 469 | AGC Kinase gene family | AT3G14370 | 61.491 | 0.0 | 542.0 | |
| Stre9g02776 | . | 2 | 469 | AGC Kinase gene family | AT3G14370 | 61.491 | 0.0 | 542.0 | |
| Stre9g00236 | . | 99 | 765 | AGC Kinase gene family | AT2G44830 | 66.47 | 0.0 | 843.0 | |
| Stre9g00848 | . | 5 | 373 | AGC Kinase gene family | AT3G25250 | 58.115 | 3.07e-150 | 430.0 | |
| Stre9g01468 | . | 58 | 198 | AGC Kinase gene family | AT1G03920 | 75.177 | 7.33e-65 | 206.0 | |
| Stre1g01420 | . | 115 | 164 | AGC Kinase gene family | AT3G23310 | 86.0 | 1.48e-24 | 91.7 | |
| Stre1g03795 | . | 470 | 934 | AGC Kinase gene family | AT3G52890 | 65.665 | 0.0 | 613.0 | |
| Stre1g04425 | . | 135 | 379 | AGC Kinase gene family | AT3G08720 | 38.462 | 5.40e-46 | 171.0 | |
| Stre1g04895 | . | 18 | 996 | AGC Kinase gene family | AT3G45780 | 68.16 | 0.0 | 1347.0 | |
| Stre1g04444 | . | 135 | 379 | AGC Kinase gene family | AT3G08720 | 38.462 | 5.30e-46 | 171.0 | |
| Stre1g04252 | . | 1 | 468 | AGC Kinase gene family | AT3G08720 | 66.667 | 0.0 | 645.0 | |
| Stre10g01137 | . | 1 | 996 | AGC Kinase gene family | AT3G45780 | 67.689 | 0.0 | 1368.0 | |
| Stre10g00263 | . | 1 | 538 | AGC Kinase gene family | AT4G14350 | 81.701 | 0.0 | 903.0 | |
| Stre10g02580 | . | 3 | 451 | AGC Kinase gene family | AT3G44610 | 64.77 | 0.0 | 538.0 | |
| Stre10g02130 | . | 229 | 331 | AGC Kinase gene family | AT3G08730 | 42.718 | 1.13e-23 | 94.7 | |
| Stre10g02472 | . | 17 | 404 | AGC Kinase gene family | AT1G51170 | 56.03 | 9.63e-148 | 422.0 | |
| Stre10g00155 | . | 88 | 765 | AGC Kinase gene family | AT2G44830 | 65.029 | 0.0 | 833.0 | |
| Stre11g01108 | . | 118 | 910 | AGC Kinase gene family | AT5G58140 | 75.561 | 0.0 | 1249.0 | |
| Stre11g01619 | . | 85 | 578 | AGC Kinase gene family | AT3G27580 | 68.639 | 0.0 | 665.0 | |
| Stre11g01608 | . | 85 | 578 | AGC Kinase gene family | AT3G27580 | 68.442 | 0.0 | 664.0 | |
| Stre11g02897 | . | 9 | 525 | AGC Kinase gene family | AT2G26700 | 58.113 | 0.0 | 570.0 | |
| Stre11g02916 | . | 9 | 525 | AGC Kinase gene family | AT2G26700 | 57.925 | 0.0 | 566.0 | |
| Stre11g01702 | . | 134 | 234 | AGC Kinase gene family | AT5G58140 | 43.636 | 1.78e-20 | 94.4 | |
| Stre11g02563 | . | 12 | 518 | AGC Kinase gene family | AT4G33080 | 79.02 | 0.0 | 830.0 | |
| Stre4g02306 | . | 38 | 459 | AGC Kinase gene family | AT3G08720 | 57.111 | 1.88e-175 | 499.0 | |
| Stre4g00209 | . | 87 | 586 | AGC Kinase gene family | AT5G47750 | 81.584 | 0.0 | 827.0 | |
| Stre4g02050 | . | 10 | 514 | AGC Kinase gene family | AT5G09890 | 75.148 | 0.0 | 809.0 | |
| Stre4g00195 | . | 87 | 586 | AGC Kinase gene family | AT5G47750 | 81.584 | 0.0 | 827.0 | |
| Stre2g05964 | . | 110 | 586 | AGC Kinase gene family | AT5G47750 | 77.002 | 0.0 | 756.0 | |
| Stre2g04367 | . | 115 | 181 | AGC Kinase gene family | AT3G23310 | 89.552 | 3.79e-36 | 125.0 | |
| Stre2g02780 | . | 40 | 263 | AGC Kinase gene family | AT5G04510 | 23.013 | 2.66e-09 | 59.7 | |
| Stre2g05494 | . | 7 | 991 | AGC Kinase gene family | AT1G45160 | 49.606 | 0.0 | 925.0 | |
| Stre2g05012 | . | 38 | 459 | AGC Kinase gene family | AT3G08720 | 56.854 | 9.59e-177 | 502.0 | |
| Stre2g02873 | . | 135 | 259 | AGC Kinase gene family | AT5G58140 | 40.299 | 5.02e-21 | 95.9 | |
| Stre8g00474 | . | 1 | 556 | AGC Kinase gene family | AT2G20470 | 73.571 | 0.0 | 839.0 | |
| Stre8g01863 | . | 30 | 1159 | AGC Kinase gene family | AT5G62310 | 57.216 | 0.0 | 1204.0 | |
| Stre8g00807 | . | 131 | 330 | AGC Kinase gene family | AT3G08730 | 30.769 | 3.41e-29 | 112.0 | |
| Stre8g00636 | . | 13 | 373 | AGC Kinase gene family | AT3G25250 | 56.836 | 1.82e-141 | 407.0 | |
| Stre3g00374 | . | 65 | 538 | AGC Kinase gene family | AT4G14350 | 79.289 | 0.0 | 775.0 | |
| Stre3g02463 | . | 3 | 451 | AGC Kinase gene family | AT3G44610 | 65.875 | 0.0 | 551.0 | |
| Stre3g01450 | . | 124 | 233 | AGC Kinase gene family | AT5G58140 | 41.176 | 6.36e-20 | 92.4 | |
| Stre3g02488 | . | 3 | 451 | AGC Kinase gene family | AT3G44610 | 65.875 | 0.0 | 551.0 | |
| Stre3g01946 | . | 377 | 934 | AGC Kinase gene family | AT3G52890 | 60.963 | 0.0 | 667.0 | |
| Stre3g02495 | . | 466 | 898 | AGC Kinase gene family | AT3G52890 | 64.896 | 0.0 | 570.0 | |
| Stre3g02489 | . | 466 | 898 | AGC Kinase gene family | AT3G52890 | 61.894 | 1.93e-180 | 533.0 | |
| Stre5g01987 | . | 16 | 408 | AGC Kinase gene family | AT3G20830 | 54.75 | 5.16e-143 | 410.0 | |
| Stre5g00746 | . | 4 | 486 | AGC Kinase gene family | AT3G10540 | 74.694 | 0.0 | 766.0 | |
| Stre5g02173 | . | 58 | 198 | AGC Kinase gene family | AT1G03920 | 75.887 | 7.46e-64 | 205.0 | |
| Stre5g00963 | . | 1 | 416 | AGC Kinase gene family | AT3G08720 | 66.825 | 0.0 | 556.0 | |
| Stre5g00022 | . | 465 | 576 | AGC Kinase gene family | AT3G45780 | 47.321 | 1.49e-31 | 124.0 | |
| Stre5g03219 | . | 12 | 525 | AGC Kinase gene family | AT2G26700 | 57.25 | 0.0 | 565.0 | |
| Stre5g02593 | . | 131 | 331 | AGC Kinase gene family | AT3G08730 | 35.821 | 1.65e-38 | 139.0 | |
| Stre7g02221 | . | 70 | 499 | AGC Kinase gene family | AT5G40030 | 74.215 | 0.0 | 672.0 | |
| Stre7g02261 | . | 85 | 578 | AGC Kinase gene family | AT3G27580 | 65.166 | 0.0 | 650.0 | |
| Stre7g02707 | . | 71 | 451 | AGC Kinase gene family | AT3G44610 | 58.854 | 1.85e-153 | 441.0 | |
| Stre7g00709 | . | 111 | 555 | AGC Kinase gene family | AT1G79250 | 71.46 | 0.0 | 645.0 | |
| Stre7g02377 | . | 133 | 1154 | AGC Kinase gene family | AT5G62310 | 58.891 | 0.0 | 1165.0 | |
| Stre7g01089 | . | 1 | 1294 | AGC Kinase gene family | AT3G17850 | 62.116 | 0.0 | 1492.0 | |
| Stre6g02823 | . | 9 | 438 | AGC Kinase gene family | AT2G34650 | 61.798 | 0.0 | 526.0 | |
| Stre6g02262 | . | 1 | 516 | AGC Kinase gene family | AT2G20470 | 78.185 | 0.0 | 842.0 | |
| Stre6g02259 | . | 1 | 517 | AGC Kinase gene family | AT2G20470 | 78.035 | 0.0 | 843.0 | |
| Stre6g02145 | . | 8 | 421 | AGC Kinase gene family | AT3G25250 | 56.265 | 8.91e-160 | 454.0 | |
| Stre6g00838 | . | 120 | 586 | AGC Kinase gene family | AT5G47750 | 74.207 | 0.0 | 718.0 | |
| Stre6g02888 | . | 111 | 164 | AGC Kinase gene family | AT3G23310 | 88.889 | 1.65e-28 | 103.0 | |
| Stre6g02149 | . | 8 | 421 | AGC Kinase gene family | AT3G25250 | 56.265 | 5.39e-160 | 455.0 | |
| Stre6g00376 | . | 10 | 454 | AGC Kinase gene family | AT3G14370 | 60.832 | 0.0 | 521.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Stre | Pkinase | 1e-33 | CL0016 | PK | AGC_RSK-2 |