AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre6g00394 ATGTCATCTTTTTCGTTACTTCCACTTACCTCCACATTCACTAGCCTTCCATCCACCAATACCCAACGAGCCATCAAGACTCGAACCAATCAGACCCAAGGGTTCAGAGTCTCGTGCAACAATGCAGTAGACAACTATAATGACAAGAAACTCATACTCCCTGGAGACCAAAAGCTTGTACTGCCCAATGTAGACCGGAGAAACCTGCTCGTCGGGCTCGGTGGGCTCTACACAGCTACCAACCTCACTTCCATGCCATCCGCAATGGCGGATCCAATCGTAGCTCCAGATATCACGGCCTTATGCAAGGACGCTGGTGCTGGCGTCAACGGCAAAGAAAAAGCTATCCGGTCACTAAAATGCTGTCCTCCGGCCCTCGGAAAAAAGATCAAACCGTTCGTGTTCCCGAAGGATAAGAAGGTGAGGATGCGATGGCCAGCACATGCCGGAACCAAAGAGCAGATTGAAAAATACCGAGCCGCGATTCAAGCCATGATAGACCTCAAGGATGAACAACCGCACAGCTTCGTGAGTCAAGCTAAGATCCATTGTGGGTACTGTAACGGTGGTTACACTCAAGCCGATAGCGGTAAAGGTTTTCCAGATAAAGATATCCAGATCCATAACTCGTGGTTGTTTTTCCCGTTTCACCGTTGGTACCTCTATTTCTACGAGAGAATCCTCGGGAAATTGATCAACGATCCGGATTTCGCGTTACCGTACTGGAAGTGGGATGAACCCGCCGGTATGCCGATCCCGGCGATGTTTCTACCAAAAACAATTAATGGCAAACGGAACCCTTTGTATGATGTTTACCGAGATCCGGATCATGTTAAAGACAGAATCGTTGATCTTGATTTTGACGGTAATGATAACGAAATCCCGGCTAAACAGCAGACGGAATGCAATCTAAGCACTGTGTACCGTGATTTGGTCCGAAATGGTGGTGATACGTTGAGTTTCTTCGGTGGTAAGTACATTGCGGGTGATTCACCGGACATGGGTAACTTCTACTCCGCAGGGTATGACCCTTCGTTCTACATTCATCACTCGAACGTGGACCGGATGTGGAAGCTATGGAAGGAACTGCGCCTTCCGGGTCACGTTGAGCTAACCGATAAAGACTGGCTCAACGCGTCTTTTGTGTTCTATGACGAGAACGAAGATCTTGTGCGTGTGTATGTTAGGGACTCGGTTAACCTTGACAAGCTTAAGTACAACTATATTGAGAACTCGAAGGAAGTGTTCCCGTGGCGCAAGAGTCGGCCCCAGAGGCGTAGAAAGAGCCAGCAAGTGGCAAAGACTGCTGAGGTGAAAACCGTGGACCAAATTAAGTTCCCGGTTCGTCTGAACAAGATCTTGAAGGTTCGTGTGAAGCGGCCCGCGGTTAACCGGAGTGATGAAGAGAAGGAGAAAGCGAATGAAGTGTTGTTGATCAAGAGGATTGAGCATGATGGTGGGAAGTTTGTCAAGTTTGATGTGTTTGTGAATGACAAACTCAAAGATGGTGAAGTGACTACTCCTTGTGACCCAGAGTACGCGGGTGGGTTCGCTCAAATCCCGCATAGCAGTAGGAAGAACATGATTATGACGAGTTCAGCTAGGTTTGGGCTAACAGAGTTGTTGGAGGACATGAACACGGAGGGTGATGAGTATGCTACCGTGACATTGGTGCCGAGGACCGGGACCGATGATCTCAACGTTGGCAGCATCCTGATCGAGTTGGTTCCAGTTTCTAAAGTCTAA 1746 48.51 MSSFSLLPLTSTFTSLPSTNTQRAIKTRTNQTQGFRVSCNNAVDNYNDKKLILPGDQKLVLPNVDRRNLLVGLGGLYTATNLTSMPSAMADPIVAPDITALCKDAGAGVNGKEKAIRSLKCCPPALGKKIKPFVFPKDKKVRMRWPAHAGTKEQIEKYRAAIQAMIDLKDEQPHSFVSQAKIHCGYCNGGYTQADSGKGFPDKDIQIHNSWLFFPFHRWYLYFYERILGKLINDPDFALPYWKWDEPAGMPIPAMFLPKTINGKRNPLYDVYRDPDHVKDRIVDLDFDGNDNEIPAKQQTECNLSTVYRDLVRNGGDTLSFFGGKYIAGDSPDMGNFYSAGYDPSFYIHHSNVDRMWKLWKELRLPGHVELTDKDWLNASFVFYDENEDLVRVYVRDSVNLDKLKYNYIENSKEVFPWRKSRPQRRRKSQQVAKTAEVKTVDQIKFPVRLNKILKVRVKRPAVNRSDEEKEKANEVLLIKRIEHDGGKFVKFDVFVNDKLKDGEVTTPCDPEYAGGFAQIPHSSRKNMIMTSSARFGLTELLEDMNTEGDEYATVTLVPRTGTDDLNVGSILIELVPVSKV 581
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre6g00394 581 ProSitePatterns Tyrosinase and hemocyanins CuB-binding region signature. 343 354 IPR002227 GO:0016491(InterPro)
Stre6g00394 581 PRINTS Tyrosinase copper-binding domain signature 342 360 IPR002227 GO:0016491(InterPro)
Stre6g00394 581 PRINTS Tyrosinase copper-binding domain signature 208 225 IPR002227 GO:0016491(InterPro)
Stre6g00394 581 PRINTS Tyrosinase copper-binding domain signature 239 244 IPR002227 GO:0016491(InterPro)
Stre6g00394 581 Pfam Polyphenol oxidase middle domain 370 424 IPR022739 GO:0004097(InterPro)
Stre6g00394 581 Pfam Protein of unknown function (DUF-B2219) 446 575 IPR022740 GO:0004097(InterPro)
Stre6g00394 581 Pfam Common central domain of tyrosinase 174 362 IPR002227 GO:0016491(InterPro)
Stre6g00394 581 SUPERFAMILY Di-copper centre-containing domain 119 408 IPR008922 -
Stre6g00394 581 Gene3D - 331 414 IPR008922 -
Stre6g00394 581 Gene3D - 91 330 IPR008922 -
Stre6g00394 581 PANTHER TYROSINASE FAMILY MEMBER 64 543 IPR050316 -
Stre6g00394 581 ProSitePatterns Tyrosinase CuA-binding region signature. 208 225 IPR002227 GO:0016491(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre6g00394 K00422 polyphenol oxidase [EC:1.10.3.1]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr6:10580416 Stre9g01608 Stre-Chr9:28297817 dispersed
Stre Stre-Chr6:10580416 Stre6g00397 Stre-Chr6:10622715 proximal
Stre Stre-Chr6:10538622 Stre6g00394 Stre-Chr6:10580416 tandem