AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre6g00436 ATGACGTCAGGGACGAGGATGCCGACGTGGAAAGAGCGGGAGAACAACAAGAGGAGAGAGAGGAGGAGGAGAGCAATCGCCGCGAAGATATTCACCGGCCTGAGAATGTACGGTAATTACAAGCTGCCGAAGCATTGCGATAATAACGAAGTACTCAAAGCGCTCGCCGATGAGGCCGGTTGGACCGTCGAACTGGACGGAACCACTTACCGGAAGGGATGCAAGCCCATGGAGCGAATGGACATTGGTGGATCTGCATCAGCAAGCCCATGTTCATCTTACCAGCCCAGCCCATACGTTTCATACCATCCAAGCCCACCATCTTCCTCAATCGCGAGCCCATCATCCTCGTACGCTCCCAACACCCACCCCGACTCACTCATCCCATGGTTAAAAAACCTCTCATCATCTTCATCCTCATCATCACACACCACCAAACTCCCACATCTTTACATCCACACCGGGTCCATTAGCGCACCCGTGACTCCACCAATGAGCTCACCAACGGCTCGATCACCTACACGAATCAAAACCAACCCACTTTGGGGTGCACCAGCTTCCGAATGGTTTACTGGCATTCGGCCAACGTCACCAACTTTCAGCCTTGTGGCAGCGAACCCGTTTGGGTTCAAGGAAACGGGTGGGTCTTATGGTGGCTCACGGATGTGGACTCCTGGTCAAAGTGGGACGTGTTCTCCTGCTATTCCTGCGGGTTTTGATAACAATGCGGATATTCCAATGGCGGAAGTTGTTTCTGATGAATTTGCATTCGGTTGCAACGCGGGAGGGAGAGTGAAACCTTGGGAAGGAGAAAGGATTCATGAGGTTTCCGGGTCTGATGATCTTGAACTTACTCTTGGAAATTCAAAAACTAGATAA 879 51.65 MTSGTRMPTWKERENNKRRERRRRAIAAKIFTGLRMYGNYKLPKHCDNNEVLKALADEAGWTVELDGTTYRKGCKPMERMDIGGSASASPCSSYQPSPYVSYHPSPPSSSIASPSSSYAPNTHPDSLIPWLKNLSSSSSSSSHTTKLPHLYIHTGSISAPVTPPMSSPTARSPTRIKTNPLWGAPASEWFTGIRPTSPTFSLVAANPFGFKETGGSYGGSRMWTPGQSGTCSPAIPAGFDNNADIPMAEVVSDEFAFGCNAGGRVKPWEGERIHEVSGSDDLELTLGNSKTR 292
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre6g00436 292 MobiDBLite consensus disorder prediction 1 21 - -
Stre6g00436 292 Pfam BES1-BZR1 plant transcription factor, N-terminal 4 134 IPR008540 -
Stre6g00436 292 PANTHER BES1-BZR1 HOMOLOG PROTEIN 3-RELATED 1 292 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
Stre6g00436 292 MobiDBLite consensus disorder prediction 96 118 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre6g00436 K14503 brassinosteroid resistant 1/2
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Event-related genes

Select Gene_1 Gene_2 Event_name
159657 Stre2g03747 Stre6g00436
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr2:139676791 Stre6g00436 Stre-Chr6:11662464 dispersed
Stre Stre-Chr6:11662464 Stre6g02729 Stre-Chr6:89199628 dispersed
Stre Stre-Chr2:139953045 Stre6g00436 Stre-Chr6:11662464 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Stre9g02560 . 1 325 BZR Transcription Factor family AT1G78700 66.565 4.78e-116 336.0
Stre9g02044 . 1 325 BZR Transcription Factor family AT1G78700 66.261 5.28e-115 333.0
Stre1g01464 . 23 333 BZR Transcription Factor family AT1G75080 62.058 1.99e-107 314.0
Stre4g02104 WGDA 22 335 BZR Transcription Factor family AT1G75080 60.692 7.08e-99 293.0
Stre2g03747 ACH 3 325 BZR Transcription Factor family AT1G78700 65.644 7.41e-108 316.0
Stre2g03736 . 3 325 BZR Transcription Factor family AT1G78700 60.123 9.11e-97 286.0
Stre2g04882 WGDA 22 335 BZR Transcription Factor family AT1G75080 60.568 2.96e-99 293.0
Stre5g01063 . 22 335 BZR Transcription Factor family AT1G75080 51.411 2.89e-78 239.0
Stre6g01135 . 42 88 BZR Transcription Factor family AT1G19350 63.83 1.52e-15 70.5
Stre6g02729 . 1 325 BZR Transcription Factor family AT1G78700 68.788 8.72e-124 356.0
Stre6g00436 ACH 1 325 BZR Transcription Factor family AT1G78700 67.988 2.24e-113 328.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Stre BES1_N 1.5e-60 No_clan TF BES1