AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stre6g00455 | ATGGCTAATCGGAATTTGGAGAAATTGGCATCGATCGACGCTCAGTTGAGGCTTTTGGTTCCCGGAAAAGTTTCTGAAGATGATAAGCTTATTGAGTATGATGCGTTGCTTTTGGATAAGTTTCTAGACATTCTTCAAGATTTGCATGGAGAGGATCTCAAAGAAACGGTTCAAGAATGCTACGAGCTTTCAGCAGAATACGAAGGAAAACGCGATCCAAAGAAGCTGGAGGAACTTGGAAATGTGCTGACAAGTTTAGATCCAGGCGATTCGATTGTGATTGCAAAAGCTTTCTCTCACATGCTTAATTTAGCCAATCTGGCTGAAGAGGTTCAGATTGCTTACCGTAGAAGAATCAAATTGAAAAAAGGCGATTTTGCTGATGAGGCCAATGCAACAACTGAATCAGACATTGAAGAAACTCTCAAGAAACTTGTGCATAAGCTTAACAAGTCCCCTGAAGAGGTTTTTGATGCACTGAAGAATCAAACCGTTGACTTGGTGTTGACCGCTCATCCAACTCAATCCGTCCGCAGATCTCTACTTCAGAAGCATGGAAGGATCCGGAACTGTTTGGCTCAGTTATATGCCAAAGACATTACTCCTGATGACAAACAGGAACTGGATGAAGCTTTACATAGAGAAATTCAAGCTGCTTTCCGTACTGATGAGATCAGAAGGACCCAACCAACCCCACAAGATGAAATGAGAGCTGGAATGAGTTATTTTCATGAAACAATATGGAAAGGTGTTCCTAAATTCTTACGACGTGTTGACACTGCTTTGAAGAATATTGGGATTAATGAGCGCGTTCCATATAACGCGCCTCTTATTCAGTTTTCTTCATGGATGGGTGGTGATCGTGATGGCAATCCAAGGGTAACTCCAGAGGTAACAAGGGATGTTTGCTTACTAGCAAGAATGATGGCTGCAAACATGTACTTTTCGCAGATAGAAGATTTAATGTTTGAGATGTCTATGTGGCGTTGTACTGATGAACTTCGTGTGCGAGCAGAAGAACTCTTTAGAACAGCAAGGAGAGATGTGAAGCACTACATAGAGTTCTGGAAACAGGTTCCTCCCACTGAACCTTACCGTGTAATTCTTGGTGATGTGAGAGATAAATTATATAACACACGCGAACGCGCTCGCCATTTATTAGCCCATGATATATCTGAAATTCCAGAAGATTCAGTTTACACCAATGTTGAACAGTTCCTGGAACCTCTGGAGCTATGCTACAGATCACTATGCGCGTGTGGTGACCGCGTTATTGCTGATGGAAGCCTTTTAGATTTTCTAAGACAGGTGTCAACATTCGGGCTTTCACTTGTAAAACTTGATATAAGACAAGAATCTGATCGCCACACGGACGTTCTTGATGCCATAACTCAACATCTTGAAATCGGGTCCTATCGCGATTGGCCAGAAGAAAAACGTCAAGAATGGCTTTTAGCTGAACTCAGTGGAAAACGTCCTCTTTTCGGTTCAGATCTCCCAAAAACCGAGGAAATTAAGGATGTTTTAGATACGTTTAATGTTCTAGCCGAACTCCCGTCTGATTGTTTTGGTGCTTATATCATCTCGATGGCCACATCACCCTCTGATGTCCTCGCTGTCGAGCTTCTCCAACGCGAATGTCATGTCAAACAACCGTTACGCGTGGTCCCACTTTTTGAAAAACTTGCTGACCTGGAAGCTGCTCCTGCTGCCATGGCCCGCCTTTTTTCAGTTGACTGGTATAAAAACCGGATCAACGGGAAACAAGAAGTTATGATCGGGTATTCGGATTCGGGAAAAGACGCGGGTCGGTTTTCTGCCGCGTGGCAACTTTACAAAGCTCAAGAAGAGCTTATAAATGTTGCGAAGAAGTTTGGGGTGAAATTGGTTATGTTTCACGGGCGCGGTGGGACCGTTGGTCGTGGTGGCGGTCCAACTCATTTGGCTATCTTGTCCCAACCACCTGACACCATTCATGGGTCATTGAGAGTCACGGTTCAGGGTGAGGTCATTGAGCAGTCTTTTGGTGAGGAACATTTGTGTTTTAGAACACTTCAAAGGTTTTGTGCAGCTACACTTGAGCATGGTATGAACCCACCAATCTCACCAAGACCTGAGTGGCGTGAACTCATGGACCAGATGGCGGTTGTTGCAACCGAACAGTATCGTTCTATTGTTTTCCAGGAACCACGTTTTGTCGAGTACTTCCGCCTCGCCACACCAGAACTGGAATACGGGCGTATGAATATCGGAAGCCGACCATCAAAAAGAAAACCGAGTGGCGGCATTGAATCACTTCGAGCCATTCCATGGATCTTTGCATGGACCCAAACCCGGTTTCATCTCCCGGTTTGGCTCGGGTTCGGTGCTGCATTCAAACAAGCCATTCAAAAAGACAGCAAGAATCTTCAAATGCTTCAAGAAATGTACAAAACTTGGCCTTTTTTCAGGGTCACAATTGATTTGGTTGAAATGGTGTTTGCGAAAGGTGACCCAGGTATTGCTGCCTTGAATGACAAGCTACTTGTTTCTGAAGATTTATGGTCGTTTGGAGAATCATTAAGAGCTAATTATGAAGAAACCAAAGATTATCTCCTCAAGATTGCTGGACATAAGGACCTACTTGAGGGTGATCCCTATTTAAAACAAAGACTTAAGTTGCGTGATTCATACATCACAACTTTAAACGTTTGTCAAGCTTACACTTTGAAACGAACCCGCGACCCGGATTATCATGTGACCCTAAGGCCTCATATTTCAAAAGAATACGCGGAGCCAAGTAAACCGGCTGATGAACTCATTCACCTGAACCCGACCAGTGAGTATGCACCGGGTTTGGAGGACACACTTATCTTGACCATGAAGGGTATTGCTGCTGGAATGCAGAACACCGGTTAA | 2898 | 44.1 | MANRNLEKLASIDAQLRLLVPGKVSEDDKLIEYDALLLDKFLDILQDLHGEDLKETVQECYELSAEYEGKRDPKKLEELGNVLTSLDPGDSIVIAKAFSHMLNLANLAEEVQIAYRRRIKLKKGDFADEANATTESDIEETLKKLVHKLNKSPEEVFDALKNQTVDLVLTAHPTQSVRRSLLQKHGRIRNCLAQLYAKDITPDDKQELDEALHREIQAAFRTDEIRRTQPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANMYFSQIEDLMFEMSMWRCTDELRVRAEELFRTARRDVKHYIEFWKQVPPTEPYRVILGDVRDKLYNTRERARHLLAHDISEIPEDSVYTNVEQFLEPLELCYRSLCACGDRVIADGSLLDFLRQVSTFGLSLVKLDIRQESDRHTDVLDAITQHLEIGSYRDWPEEKRQEWLLAELSGKRPLFGSDLPKTEEIKDVLDTFNVLAELPSDCFGAYIISMATSPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAAMARLFSVDWYKNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELINVAKKFGVKLVMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFCAATLEHGMNPPISPRPEWRELMDQMAVVATEQYRSIVFQEPRFVEYFRLATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKQAIQKDSKNLQMLQEMYKTWPFFRVTIDLVEMVFAKGDPGIAALNDKLLVSEDLWSFGESLRANYEETKDYLLKIAGHKDLLEGDPYLKQRLKLRDSYITTLNVCQAYTLKRTRDPDYHVTLRPHISKEYAEPSKPADELIHLNPTSEYAPGLEDTLILTMKGIAAGMQNTG | 965 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stre6g00455 | 965 | Pfam | Phosphoenolpyruvate carboxylase | 34 | 965 | IPR021135 | GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro) | |
| Stre6g00455 | 965 | Gene3D | Phosphoenolpyruvate-pyruvate domain | 308 | 443 | - | - | |
| Stre6g00455 | 965 | FunFam | Phosphoenolpyruvate carboxylase 1 | 308 | 443 | - | - | |
| Stre6g00455 | 965 | SUPERFAMILY | Phosphoenolpyruvate-pyruvate domain | 33 | 965 | IPR015813 | GO:0003824(InterPro) | |
| Stre6g00455 | 965 | ProSitePatterns | Phosphoenolpyruvate carboxylase active site 2. | 591 | 603 | IPR033129 | - | |
| Stre6g00455 | 965 | PANTHER | PHOSPHOENOLPYRUVATE CARBOXYLASE | 27 | 965 | IPR021135 | GO:0005829(PANTHER)|GO:0006099(InterPro)|GO:0008964(PANTHER)|GO:0008964(InterPro)|GO:0009507(PANTHER)|GO:0015977(InterPro)|GO:0048046(PANTHER)|GO:0048366(PANTHER) | |
| Stre6g00455 | 965 | Hamap | Phosphoenolpyruvate carboxylase [ppc]. | 23 | 965 | IPR022805 | GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro) | |
| Stre6g00455 | 965 | ProSitePatterns | Phosphoenolpyruvate carboxylase active site 1. | 168 | 179 | IPR018129 | - | |
| Stre6g00455 | 965 | PRINTS | Phosphoenolpyruvate carboxylase signature | 589 | 609 | IPR021135 | GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro) | |
| Stre6g00455 | 965 | PRINTS | Phosphoenolpyruvate carboxylase signature | 440 | 460 | IPR021135 | GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro) | |
| Stre6g00455 | 965 | PRINTS | Phosphoenolpyruvate carboxylase signature | 167 | 180 | IPR021135 | GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro) | |
| Stre6g00455 | 965 | PRINTS | Phosphoenolpyruvate carboxylase signature | 631 | 660 | IPR021135 | GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro) | |
| Stre6g00455 | 965 | PRINTS | Phosphoenolpyruvate carboxylase signature | 220 | 236 | IPR021135 | GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro) | |
| Stre6g00455 | 965 | PRINTS | Phosphoenolpyruvate carboxylase signature | 280 | 295 | IPR021135 | GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro) | |
| Stre6g00455 | 965 | PRINTS | Phosphoenolpyruvate carboxylase signature | 763 | 789 | IPR021135 | GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stre6g00455 | K01595 | phosphoenolpyruvate carboxylase [EC:4.1.1.31] |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 159660 | Stre2g03761 | Stre6g00455 | |
| 160592 | Stre6g00455 | Stre9g02907 | |
| 435544 | Stre6g00455 | Stre9g01571 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Stre | Stre-Chr11:14544685 | Stre6g00455 | Stre-Chr6:12543210 | dispersed | |
| Stre | Stre-Chr6:12543210 | Stre8g03041 | Stre-Chr8:99107199 | dispersed | |
| Stre | Stre-Chr2:140196485 | Stre6g00455 | Stre-Chr6:12543210 | wgd | |
| Stre | Stre-Chr3:14624023 | Stre6g00455 | Stre-Chr6:12543210 | wgd | |
| Stre | Stre-Chr6:12543210 | Stre9g02907 | Stre-Chr9:94745559 | wgd | |
| Stre | Stre-Chr6:12543210 | Stre9g01571 | Stre-Chr9:27577899 | wgd |