AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stre6g00469 | ATGGATTCAGTGATATTAGATGCGGATAAAATAAGCAAAGGGAAGAGTAAGTGGGGAGAAGATAACAAAGTATACACAAGAAGGTCCAAAACCACCACCAATAAGGCCGCCGTCTCCGCCGCCGCCACCACCTCTTCTCCAACCCCTATAGCCACCGTCACAGCTACATCACCACCTACCACCTCAAATAACGGTCAAACCGTAGCTACCGAACCAGCAAATCTAGTAAACCGACGAACTTTATCACCTATAGCAGATGCTTCCGATGATCAATCCGGTCTGCAGCCCGCCGGAAACGGGTTGGTAAAACCGGTTGTTAGTTTGGTTAACGGTCATGTCAGGATTAACTTACGGGCCTTGAAGTCTAAAGATGAAATCGTTGAGCTCACGGAGACCATGAAAACCGAGCTTGAACGAGTCCGACACGTGGTTCAAAGGCTTGAAGATAAAGAAGCCGAGCTAACAGCGGTTCCAACCGAAGTTGGTGTTGCTGGTGACGGTTCGGCTTATGATCATTTGCAGTATCCGGGTGATGATATAGTTGATACGCGAGCTTTGGTTAGGGTTAGTTCAAATACGGGTGCAGGTGCAGGTTTCGTGGACCATAGGGCGTTGATGAGGATCAATTCCGAAGTGGGTTCGGTTACACATAGTGATTTAACGCCTTTTAGGCGGTTAAGTGTGTCGGTTATGAATAATAATCATGGAATTGGTGAGTTTATGGAGAAAGAAAAGAGAACACCAAAGGCGAATCAGTATTACAGAAATTCTGATTTTCTTCTTGGAAAAGATCGATTACCTGTTGAAACGAATAAAAGGCGTAAATCCAACAGTGGAAGAAAACACAGCAAAGAATCAGATTATGGAAGAAATCAAGTTTTCAAGAATTGTAGCAATTTGTTGCAGAGGTTAATGAAGCATAAGTTCAGTTGGGTGTTTAATGAACCGGTTAATGCTAAACAATTAGGACTTCATGATTATCATGATATAATTAAGCACCCGATGGATTTAGGTACGATTAAGAGCCGTCTTGCACAAAACTTTTATAAATCTTCAATTGAATTTGCAGAGGATGTTAGACTCACGTTCCGTAACGCGATGATTTATAACCCAAAAGGGCAAGATGTGCATTTTATGGCTGAAAATTTATCAAATCTTTTTGAAGAAAAATGGGCTTTGATTGAATCAGAATTAGAATCTAATAATCAAGATTTGAGATATGGAATGATTTATGATGCAAACACACCAACTCCAACTTCAAGAAAAGTTCCTCATTTTGCACATGCACCTTCTAGAATGTTGTACAGGTCAGAATCTTTGAATTTGCCTGTGCTGACGAGGCAAAGACCCGTTGCGCCAGCTGTCAGGACACCTGTACCGAAGAAACCGAAAGCGAAGGATCCGAATAAGAGAAACATGACTTATGAAGAGAAGCAGAAACTTAGTACAAATCTTCAGAGTTTACCTTCTGAGAAACTTGATAGTATTGTGCAGATTATTAAAAAGAATACTTCGCTTTCGCAACATGATGATGAAATTGAAGTTGATATTGATAGTGTTGATATTGAAACACTTTGGGAACTTGATCGGTTTGTTACTAATTATAAAAAGAATTTGAGTAAGCATAAAAGGAAAGCTTTACTTGCTCAACAAGCAGCTGGTGATATTAATCACACCGTGAACCCATCAACATCCATTCCAGAGGCTCATAAAGAAAATAATACAAATGAAAATAATCTTGCTAATGAAGGTGGGAGAGGAGACAATGCTAGTAGTTCAAGCAGTTCTAGTAGTGATTCTGGATCCTCTTCAAGTGATTCAGATAGTGATAGTTCATCTGAAGATGGATCAGATGCAGGTCATTCACCTAGACGTTGA | 1878 | 40.42 | MDSVILDADKISKGKSKWGEDNKVYTRRSKTTTNKAAVSAAATTSSPTPIATVTATSPPTTSNNGQTVATEPANLVNRRTLSPIADASDDQSGLQPAGNGLVKPVVSLVNGHVRINLRALKSKDEIVELTETMKTELERVRHVVQRLEDKEAELTAVPTEVGVAGDGSAYDHLQYPGDDIVDTRALVRVSSNTGAGAGFVDHRALMRINSEVGSVTHSDLTPFRRLSVSVMNNNHGIGEFMEKEKRTPKANQYYRNSDFLLGKDRLPVETNKRRKSNSGRKHSKESDYGRNQVFKNCSNLLQRLMKHKFSWVFNEPVNAKQLGLHDYHDIIKHPMDLGTIKSRLAQNFYKSSIEFAEDVRLTFRNAMIYNPKGQDVHFMAENLSNLFEEKWALIESELESNNQDLRYGMIYDANTPTPTSRKVPHFAHAPSRMLYRSESLNLPVLTRQRPVAPAVRTPVPKKPKAKDPNKRNMTYEEKQKLSTNLQSLPSEKLDSIVQIIKKNTSLSQHDDEIEVDIDSVDIETLWELDRFVTNYKKNLSKHKRKALLAQQAAGDINHTVNPSTSIPEAHKENNTNENNLANEGGRGDNASSSSSSSSDSGSSSSDSDSDSSSEDGSDAGHSPRR | 625 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stre6g00469 | 625 | MobiDBLite | consensus disorder prediction | 265 | 289 | - | - | |
| Stre6g00469 | 625 | PANTHER | OSJNBA0053K19.4 PROTEIN | 20 | 617 | - | - | |
| Stre6g00469 | 625 | Coils | Coil | 130 | 157 | - | - | |
| Stre6g00469 | 625 | SUPERFAMILY | Bromodomain | 277 | 399 | IPR036427 | GO:0005515(InterPro) | |
| Stre6g00469 | 625 | SMART | bromo-6 | 290 | 396 | IPR001487 | GO:0005515(InterPro) | |
| Stre6g00469 | 625 | MobiDBLite | consensus disorder prediction | 553 | 625 | - | - | |
| Stre6g00469 | 625 | ProSiteProfiles | NET domain profile. | 463 | 543 | IPR027353 | - | |
| Stre6g00469 | 625 | MobiDBLite | consensus disorder prediction | 27 | 68 | - | - | |
| Stre6g00469 | 625 | Gene3D | - | 466 | 545 | IPR038336 | - | |
| Stre6g00469 | 625 | PRINTS | Bromodomain signature | 324 | 340 | IPR001487 | GO:0005515(InterPro) | |
| Stre6g00469 | 625 | PRINTS | Bromodomain signature | 358 | 377 | IPR001487 | GO:0005515(InterPro) | |
| Stre6g00469 | 625 | PRINTS | Bromodomain signature | 308 | 321 | IPR001487 | GO:0005515(InterPro) | |
| Stre6g00469 | 625 | PRINTS | Bromodomain signature | 340 | 358 | IPR001487 | GO:0005515(InterPro) | |
| Stre6g00469 | 625 | Pfam | Bromodomain extra-terminal - transcription regulation | 473 | 533 | IPR027353 | - | |
| Stre6g00469 | 625 | Pfam | Bromodomain | 297 | 381 | IPR001487 | GO:0005515(InterPro) | |
| Stre6g00469 | 625 | CDD | Bromo-plant1 | 293 | 391 | IPR037377 | - | |
| Stre6g00469 | 625 | MobiDBLite | consensus disorder prediction | 29 | 68 | - | - | |
| Stre6g00469 | 625 | ProSiteProfiles | Bromodomain profile. | 305 | 377 | IPR001487 | GO:0005515(InterPro) | |
| Stre6g00469 | 625 | MobiDBLite | consensus disorder prediction | 554 | 610 | - | - | |
| Stre6g00469 | 625 | Gene3D | - | 260 | 407 | IPR036427 | GO:0005515(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stre6g00469 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 159667 | Stre2g03770 | Stre6g00469 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Stre | Stre-Chr3:16473109 | Stre6g00469 | Stre-Chr6:12826198 | dispersed | |
| Stre | Stre-Chr6:12826198 | Stre9g02145 | Stre-Chr9:43943058 | dispersed | |
| Stre | Stre-Chr11:35250506 | Stre6g00469 | Stre-Chr6:12826198 | transposed | |
| Stre | Stre-Chr2:140365318 | Stre6g00469 | Stre-Chr6:12826198 | wgd |