AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stre6g00490 | ATGGCGTCATTTCACAAATTCCTCTGCATCTTCTTCCCTTTCTTCTTCACCATCCTCTGTTTCTCCAATGCTTACACTTTCACTATTGGCGGCAAAGATGGATGGACTTTACACCCGTCGCAAGATTACAATCAGTTTTCCAATAAATCGAGGTTCATCGTTAACGACATTCTCCATTTCAAGTATAATGGTGCGTCAGATTCTGTTCTGGTGGTTAGCAAAGGGGATTATGATAGCTGTAACATTAACAGCCCCATAACCACACTCACCGGCGGCGATTCTTATTTTACTTTGAACCGACCCGGACCGTTTTACTTCATTAGTGGTAATAAATCGAACTGTGATCAAGGTCAGAAACTAACTGTCGTTGTTATATCGCCGAAAACCAAGAAAGCACCGCCGGCCGGTGCTCCAGCTCCGGCGAAAAGCACCGGGTCCCCTATTTCGTCACCACCCGGATCGGAAACGCCCGGGTCAAATAGTCCAGCGAGTTCACCTGGAGGAGGTGGAATGACGTCTTCTCCGACCGGTAGCCCGGCGGGTTCACCTGGTGGGATGGGCTCATCTTCTCCGACCGGTGGTCCGGCGGCTGCACCTGGTATTTCGGCATCTCCTACCGGTAACCCGGCGGATGTAAATGGTCCGGCACCCGGTGGAGGTATTTCGGCATCTCCTACCGGTAACCCGGCGGATTCAAATGGTCCGGCACCGACAGGGTCACCGGCAGGGGCGGGGATACCGGCGGTTTGTGCATCGTTGACGGTGCCGATTGCCATGATAATATTTATGGTTGGGTGGGTTTATTAA | 807 | 51.67 | MASFHKFLCIFFPFFFTILCFSNAYTFTIGGKDGWTLHPSQDYNQFSNKSRFIVNDILHFKYNGASDSVLVVSKGDYDSCNINSPITTLTGGDSYFTLNRPGPFYFISGNKSNCDQGQKLTVVVISPKTKKAPPAGAPAPAKSTGSPISSPPGSETPGSNSPASSPGGGGMTSSPTGSPAGSPGGMGSSSPTGGPAAAPGISASPTGNPADVNGPAPGGGISASPTGNPADSNGPAPTGSPAGAGIPAVCASLTVPIAMIIFMVGWVY | 268 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stre6g00490 | 268 | Gene3D | - | 23 | 129 | IPR008972 | - | |
| Stre6g00490 | 268 | ProSiteProfiles | Phytocyanin domain profile. | 25 | 126 | IPR003245 | GO:0009055(InterPro) | |
| Stre6g00490 | 268 | FunFam | Early nodulin-like protein 1 | 24 | 129 | - | - | |
| Stre6g00490 | 268 | CDD | OsENODL1-like | 25 | 125 | IPR041846 | - | |
| Stre6g00490 | 268 | SUPERFAMILY | Cupredoxins | 24 | 125 | IPR008972 | - | |
| Stre6g00490 | 268 | MobiDBLite | consensus disorder prediction | 143 | 189 | - | - | |
| Stre6g00490 | 268 | MobiDBLite | consensus disorder prediction | 129 | 239 | - | - | |
| Stre6g00490 | 268 | PANTHER | BLUE COPPER PROTEIN | 20 | 151 | IPR039391 | GO:0009055(InterPro)|GO:0046658(PANTHER) | |
| Stre6g00490 | 268 | Pfam | Plastocyanin-like domain | 35 | 118 | IPR003245 | GO:0009055(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stre6g00490 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 159676 | Stre2g03800 | Stre6g00490 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Stre | Stre-Chr6:13490122 | Stre6g00613 | Stre-Chr6:17416158 | dispersed | |
| Stre | Stre-Chr2:140873884 | Stre6g00490 | Stre-Chr6:13490122 | wgd | |
| Stre | Stre-Chr3:14447925 | Stre6g00490 | Stre-Chr6:13490122 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Stre9g00896 | . | 8 | 146 | PhytocyaNIN gene family | AT5G15350 | 34.899 | 3.98e-16 | 70.1 | |
| Stre9g01483 | . | 23 | 136 | PhytocyaNIN gene family | AT1G17800 | 40.87 | 1.10e-20 | 79.7 | |
| Stre9g02085 | . | 2 | 158 | PhytocyaNIN gene family | AT5G15350 | 40.252 | 4.58e-39 | 129.0 | |
| Stre10g00747 | . | 33 | 160 | PhytocyaNIN gene family | AT1G64640 | 57.664 | 1.10e-46 | 150.0 | |
| Stre4g02184 | . | 8 | 129 | PhytocyaNIN gene family | AT1G48940 | 54.098 | 3.84e-45 | 145.0 | |
| Stre4g01578 | . | 48 | 131 | PhytocyaNIN gene family | AT5G15350 | 47.126 | 3.56e-20 | 82.8 | |
| Stre4g01580 | . | 7 | 168 | PhytocyaNIN gene family | AT5G15350 | 48.78 | 1.76e-54 | 168.0 | |
| Stre4g00872 | . | 15 | 155 | PhytocyaNIN gene family | AT1G08500 | 47.945 | 1.56e-37 | 128.0 | |
| Stre4g02644 | . | 14 | 151 | PhytocyaNIN gene family | AT1G79800 | 44.928 | 1.15e-41 | 137.0 | |
| Stre4g01579 | . | 10 | 162 | PhytocyaNIN gene family | AT5G15350 | 38.961 | 3.33e-31 | 110.0 | |
| Stre4g01576 | WGDA | 28 | 163 | PhytocyaNIN gene family | AT2G27035 | 41.606 | 2.70e-38 | 127.0 | |
| Stre2g03800 | ACH,WGDA | 6 | 279 | PhytocyaNIN gene family | AT4G27520 | 39.568 | 2.76e-46 | 159.0 | |
| Stre2g00509 | . | 1 | 199 | PhytocyaNIN gene family | AT4G28365 | 41.827 | 3.90e-51 | 162.0 | |
| Stre2g04524 | WGDA | 9 | 168 | PhytocyaNIN gene family | AT5G15350 | 50.0 | 1.36e-54 | 169.0 | |
| Stre2g03881 | ACH | 1 | 188 | PhytocyaNIN gene family | AT3G20570 | 39.614 | 6.81e-45 | 147.0 | |
| Stre2g06053 | ACH | 14 | 188 | PhytocyaNIN gene family | AT3G20570 | 42.857 | 1.34e-43 | 142.0 | |
| Stre3g01100 | WGDA | 3 | 196 | PhytocyaNIN gene family | AT5G53870 | 45.778 | 1.42e-50 | 168.0 | |
| Stre5g01403 | WGDA | 16 | 126 | PhytocyaNIN gene family | AT4G12880 | 37.5 | 7.87e-20 | 78.6 | |
| Stre5g03108 | . | 19 | 138 | PhytocyaNIN gene family | AT5G57920 | 45.833 | 3.63e-35 | 120.0 | |
| Stre5g02904 | . | 9 | 133 | PhytocyaNIN gene family | AT1G79800 | 46.457 | 1.35e-38 | 129.0 | |
| Stre5g01404 | WGDA | 15 | 126 | PhytocyaNIN gene family | AT4G12880 | 34.513 | 1.59e-18 | 75.5 | |
| Stre7g00295 | . | 14 | 183 | PhytocyaNIN gene family | AT1G08500 | 36.994 | 2.24e-27 | 102.0 | |
| Stre7g01666 | . | 12 | 201 | PhytocyaNIN gene family | AT1G08500 | 57.653 | 6.70e-72 | 217.0 | |
| Stre6g00490 | ACH | 11 | 159 | PhytocyaNIN gene family | AT4G27520 | 46.988 | 1.21e-41 | 144.0 | |
| Stre6g00613 | ACH | 15 | 202 | PhytocyaNIN gene family | AT3G20570 | 45.503 | 3.16e-48 | 154.0 | |
| Stre6g01403 | . | 7 | 126 | PhytocyaNIN gene family | AT3G18590 | 28.689 | 7.73e-11 | 55.5 | |
| Stre6g01401 | . | 27 | 131 | PhytocyaNIN gene family | AT3G20570 | 32.075 | 1.92e-15 | 68.2 |