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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre6g00492 ATGGAGGTCACATCAACACAACACGATAAAGAAAACCCATCTCCGGCGAACTCTCCGGCGAGCAACGGCAGCAGTAGTAACAGCAATGGACACACCACCCAAACACCACCGGTAACTCCAAGACCCGTTTCAAGATCCGAACCAAATCCATACCCAACAACTTTCGTCCAAGCAGACACTACTTCCTTCAAACAAGTAGTCCAGATGCTAACCGGATCATCCAAACCAACCCCACAACCAGATCCGGCTCCGTCGAAGATATCCATACCGCCGATTAAATCCGGTCAAAAGAAACAAGGGTTCAAGCTCTACGAGCGTCGAAACAGCCTAAAAAACGGGCTGATGATCAACCCATCGGTTTCGAAATCGGGTTACGGACATGGGTTATCGCCGAGAGTCCCTGAATTGCTGTCTCCGAGCATTCTTGATTTTCCGGCGTTGGTTCTTAGTCCTGTGACGCCATTGATAGAAGATCCGTTTAATAAATCTTCGCCGGCAATATGTAATTCGTCGGAGGAGGAAAGAGTGATTGCAGAAAAAGGGTTTTACTTACATCCGTCGCCTAGACCGGCGACGCCGGACGGGACACCGGAGCCGAGACTGTTGCCTCTTTTTCCGGTGACATCGCCGCGGGTATCGAAGTCGTCGGTTTAG 654 50.46 MEVTSTQHDKENPSPANSPASNGSSSNSNGHTTQTPPVTPRPVSRSEPNPYPTTFVQADTTSFKQVVQMLTGSSKPTPQPDPAPSKISIPPIKSGQKKQGFKLYERRNSLKNGLMINPSVSKSGYGHGLSPRVPELLSPSILDFPALVLSPVTPLIEDPFNKSSPAICNSSEEERVIAEKGFYLHPSPRPATPDGTPEPRLLPLFPVTSPRVSKSSV 217
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre6g00492 217 Pfam VQ motif 50 75 IPR008889 -
Stre6g00492 217 MobiDBLite consensus disorder prediction 190 204 - -
Stre6g00492 217 MobiDBLite consensus disorder prediction 182 217 - -
Stre6g00492 217 MobiDBLite consensus disorder prediction 48 76 - -
Stre6g00492 217 PANTHER VQ MOTIF-CONTAINING PROTEIN 11-LIKE 27 213 IPR039611 -
Stre6g00492 217 MobiDBLite consensus disorder prediction 8 40 - -
Stre6g00492 217 MobiDBLite consensus disorder prediction 1 99 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre6g00492 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
159678 Stre2g03804 Stre6g00492
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr2:99161785 Stre6g00492 Stre-Chr6:13547164 dispersed
Stre Stre-Chr2:99826999 Stre6g00492 Stre-Chr6:13547164 dispersed
Stre Stre-Chr6:13547164 Stre6g03258 Stre-Chr6:97795372 dispersed
Stre Stre-Chr2:140900941 Stre6g00492 Stre-Chr6:13547164 wgd
Stre Stre-Chr4:55946006 Stre6g00492 Stre-Chr6:13547164 wgd