AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre6g00496 ATGACTGGTGTGCCATTGGATTTAAGAACACAAAGTTATGGATCACCACAACAACCACAAAACAGTTCGTTGCAGACTCAAAATGGGCTCGTTGCACGCAAGCCTTCAAGGATGTCGTTATCTGGTTCAAGGGAGAAAGATAAATTTCTTCCTTTTTTGTGTAGATATCTAAGTAGAAAGAAGATTGTGATGATGATTTTAGTTTCAATTGCACTCATGGCTTTCTTATCCGGGTTCTTTACTGTCAATAGAGATGCATCAGAGAGCACGATCTTCAATCATTTTAGCGAAACTTATAACACCTCTTTACAGTTCTCTAGTATGTATCATGGTCAGAAAGATGATGATTCTAGTATACAAAAAACTTTATCTGTATGTGAAGAAAACCCGCCTACCCGTCATACTATTGGTGCATCTCATTCCACAGGATCCGCCCCTTTGCATAGCAATTTATGTCAGAATTTTGCATTTCCACCCCCTCCTCCGGGTGACAGGAGACGACCTGGACCTAGACCTTGTCCTGTATGTTATCTTCCAGTGGAAGAAGCTATAGCTAGCATGCCAAGCGCCACGTCAGCATCACCTGTTCTTCAACACTTAAGTTATTTTCATGAAGAAACTTCTACTAAAACCGAACGACATGAAGGATCAGATTTTGGTGGATATCCTTCCATAAAGCAAAGGAATGAATCTTTTGATATCAAAGAATCAATGAGTGTACATTGTGGGTTTGTAAAAGGTTGCAGGCCTGGTTACAAAACTGGATTTGATATCGATGTAGCTGATCTTGTGGAGTTGGAGCAATATCATGATATTATTGTTGCATCAGCCATATTTGGAAACTATGATGTAATTCAGCAACCAATTAAGATTAGTGAGGCTGCAAGTAAAGAGATACCATTTTATATGTTTATTGATGAAGAAACTGAAGCATATATGAGAAATTCTAGTGCTTTGGACTACAGAATGAAGGTTGGATTATGGAGAATTATTGTCGTGCATAATGTTCCTTACACCGATTCTAGACGAAATGGAAAGGTCCCTAAGCTTTTACTACACAGACTGTTTCCAAATGTTCGGTATTCAATATGGATTGACGGAAAGCTGCAACTCGTTGTGGACCCGTATCAACTTCTTGAAAGGTTTTTGTGGCGCAACAATGCTACTTTTGCAATCTCAAAACATTATAGACGGTTTGATGTGTTTGAAGAAGCTGAAGCTAATAAAGCTGCAGGAAAATACGACAATGCATCAATCGATTACCAGATTGATTTTTACAGAAACGAGGGTTTAACACCTTACTCCGAAGCTAAGCTTCCTATAATCAGCGATGTTCCGGAAGGGTGTGTGATCATACGAGAACATATTCCAATAACGAATTTGTTCACGTGTTTGTGGTTTAATGAAGTTGACCGGTTTACTTCACGAGATCAGTTAAGTTTCGGTATTGTTAGAGACAAAATTATGGCTCAAGTCAACTGGAGTATTAATATGTTTATGGACTGCGAAAGACGGAATTTCGTCATACAGGCATACCATAGGGATCTACTAGAGCACATGCCACCACCAGCTCCTGTTAAAATCAGTTCAAAACGGGCACGCGTTAACGTTCCTGTTACGGTTCCTATACCCGTGAAGGGTAATAATTCATTTGCTAAAACTTCGGTGAAGAAAAACGCTGTTAAACGTGGGAAAGGAGAGAGGAGATCGCGTTCTAGAAGGCATGTGAAAAATCCGGTTAATAGGGACAACATGGTCATTTGA 1764 39.57 MTGVPLDLRTQSYGSPQQPQNSSLQTQNGLVARKPSRMSLSGSREKDKFLPFLCRYLSRKKIVMMILVSIALMAFLSGFFTVNRDASESTIFNHFSETYNTSLQFSSMYHGQKDDDSSIQKTLSVCEENPPTRHTIGASHSTGSAPLHSNLCQNFAFPPPPPGDRRRPGPRPCPVCYLPVEEAIASMPSATSASPVLQHLSYFHEETSTKTERHEGSDFGGYPSIKQRNESFDIKESMSVHCGFVKGCRPGYKTGFDIDVADLVELEQYHDIIVASAIFGNYDVIQQPIKISEAASKEIPFYMFIDEETEAYMRNSSALDYRMKVGLWRIIVVHNVPYTDSRRNGKVPKLLLHRLFPNVRYSIWIDGKLQLVVDPYQLLERFLWRNNATFAISKHYRRFDVFEEAEANKAAGKYDNASIDYQIDFYRNEGLTPYSEAKLPIISDVPEGCVIIREHIPITNLFTCLWFNEVDRFTSRDQLSFGIVRDKIMAQVNWSINMFMDCERRNFVIQAYHRDLLEHMPPPAPVKISSKRARVNVPVTVPIPVKGNNSFAKTSVKKNAVKRGKGERRSRSRRHVKNPVNRDNMVI 587
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre6g00496 587 MobiDBLite consensus disorder prediction 1 42 - -
Stre6g00496 587 MobiDBLite consensus disorder prediction 554 587 - -
Stre6g00496 587 MobiDBLite consensus disorder prediction 1 34 - -
Stre6g00496 587 Pfam TOD1-MUCI70, glycosyltransferase-like domain 200 513 IPR048354 -
Stre6g00496 587 PANTHER ALKALINE CERAMIDASE-RELATED 36 548 IPR006852 -
Stre6g00496 587 MobiDBLite consensus disorder prediction 558 576 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre6g00496 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr6:13684806 Stre6g03261 Stre-Chr6:97880958 dispersed
Stre Stre-Chr4:55555055 Stre6g00496 Stre-Chr6:13684806 wgd