AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre6g00528 ATGGAGACCCCAGTTTCAAAAAGGTTGTTGAGAAAGAAACCCCTTTCTAGAAGCTATGATGAGAATTTGATGGATGATTATTTGGATAAACAGTTAGGTAGTTCTTCTAGGAAAAGGTTTAGAACAAAGAAGGAATTAGAGAAAGAAACAGAAAAAGAAGCCATGATCGCGCTTTCTTTAGGGTTTCCAATAGATGCATTGCTTGAAGAAGAAATTAAAGCTAATGTAGTGAGTGAGTTAGATGGTAAACAACAGAATGACTATATTGTTGTTAGAAACCATATTCTTTCAAGATGGAGAGCTAATGTGCACGCGTGGCTCTCTAAAGGTCAAATTAAGGAAACCGTAAGTAACGAGTATGGTCAACTGATACATTCAGCTTATGATTTTCTTTTGTTTAACGGTTATATTAATTTCGGGGTTTCACCGCCTTTTAAGGCTCAAATGCCCGAAGAAGCAACCGAGGGGTCTGTGATAATAATTGGTGCAGGACTCGCGGGGTTAGCTGCTGCGCGCCAGCTGTTAGCTTTTGGTTTTAAAGTGATTGTTCTAGAAGGTAGAAATAGACCCGGTGGAAGAGTTTATACGCAAAAGATGGGGCAAAAAGGTAATTTTGCTGCTGTAGATCTTGGTGGTAGTGTTATTACAGGTATTCATGCAAACCCTCTTGGTGTTTTAGCCAGACAACTTTCAATTCCTCTTCATAAAGTTAGAGATAAATGCCCGTTGTATGATCCAGAAGGTCGACCCGTTGGTGATGAAATTGATTCCAAAATAGAATTTATTTTTAACCGGCTTTTAGATAAAGTTACTGAATTTAGACAAATTATGGGCGAATCAGCTGCTGATATATCTTTAGGTTCAGTTCTTGAAAAACTTAAACAGATGTACACCGTGGCGACGACACCCGAGGAAAATCAGTTACTCGATTGGCATTTTGCAAATTTAGAATACGCAAATGCGGGTTGTCTTTCGCATCTTTCTGCTGCGTATTGGGATCAAGATGACCCGTATGAAATGGGTGGTGATCATTGTTTTCTTGCAGGTGGAAATTGGAGATTAATTGAATCATTATGTGAAGGAGTACCAATTTTTTATGAAAAAACCATTCAAACGGTTCGTTACACTAACGAAGGCGTTGAAGTGATTTCCGGTGATCAAACATATCAAGCAGATATGGTGTTATGCACCGTTCCTCTTGGTGTTTTAAAAAAACGAAGCGTAAAGTTTATACCTGAATTACCTGAAAGAAAACTAAAAGCGATTGATAGATTGGGATTTGGGTTGTTGAATAAGGTTGCGATGGTGTTTCCGTATGTTTTTTGGGGTGAAGATTTGGATACGTTTGGTTGTCTTAGTAAGAATAGTTATACGCGCGGTGAGTTTTTTTTGTTTTATGGTTATCATACGGTTTCTGGTGGTTCAGTTCTTGTTGCATTGGTTGCTGGTGAAGCTGCAAGATCTTTTGAGTCCACTCATCCTTCCACTTTACTACACCGTGTTTTAAGCATCCTCCGAGGTATATATGGTCCAAAGGGTATTGATGTACCAAATCCAATCCAATCTGTTTGTACAAAATGGGGAAATGACCCGCTTTCTTATGGATCATACTCTCATGTACGGGTTCACTCTTCAGGTAGTGATTATGACATACTTGCAGAAAATGTCGAAAACCGCCTTTTTTTCGCCGGTGAAGCCACCAACCGCCAACATCCCGCCACCATGCACGGTGCTTATTTAAGCGGTTTAAGAGAAGCTTCATGCATTTACAGAGCCACAAGAGGCGGTATCAAACAAACTCATCTCAAAAAAAGCAACCGAAAAATCGTTGGAGTTGGTGATATTCTTGTAAATCTGTTTAAATACCCGGATTTAACTTTTGGGAATTTTTATTTCGTGTTTGACCCGTCAAACCAAGACCCTAAATCAACCGGGCTTATGATGGTTACAATCGAGAGTTCGTTATGTTATGATAATGGTAAAGTTAACAACTTTCAAGATTCCGACAAGCAAGTGTTGAAGCTTTATACGATTATATCGCGTGTACAAGCGGATGAGTTGGAATCGGTTGTAGGAGGTAGTGAAAGTCGAATGACATATTTGTATAAAAACCTCGGGTTGAAATTAATGGGTTTGGACCGTTTTGCCCTTGTGGCAAATTCGTTGATTTCGAGTATTGCTACAAAAAGAGGAAGGGTTAGAAACCGTCGAATCGTTTATGGAAACCGTGTTTAA 2235 39.28 METPVSKRLLRKKPLSRSYDENLMDDYLDKQLGSSSRKRFRTKKELEKETEKEAMIALSLGFPIDALLEEEIKANVVSELDGKQQNDYIVVRNHILSRWRANVHAWLSKGQIKETVSNEYGQLIHSAYDFLLFNGYINFGVSPPFKAQMPEEATEGSVIIIGAGLAGLAAARQLLAFGFKVIVLEGRNRPGGRVYTQKMGQKGNFAAVDLGGSVITGIHANPLGVLARQLSIPLHKVRDKCPLYDPEGRPVGDEIDSKIEFIFNRLLDKVTEFRQIMGESAADISLGSVLEKLKQMYTVATTPEENQLLDWHFANLEYANAGCLSHLSAAYWDQDDPYEMGGDHCFLAGGNWRLIESLCEGVPIFYEKTIQTVRYTNEGVEVISGDQTYQADMVLCTVPLGVLKKRSVKFIPELPERKLKAIDRLGFGLLNKVAMVFPYVFWGEDLDTFGCLSKNSYTRGEFFLFYGYHTVSGGSVLVALVAGEAARSFESTHPSTLLHRVLSILRGIYGPKGIDVPNPIQSVCTKWGNDPLSYGSYSHVRVHSSGSDYDILAENVENRLFFAGEATNRQHPATMHGAYLSGLREASCIYRATRGGIKQTHLKKSNRKIVGVGDILVNLFKYPDLTFGNFYFVFDPSNQDPKSTGLMMVTIESSLCYDNGKVNNFQDSDKQVLKLYTIISRVQADELESVVGGSESRMTYLYKNLGLKLMGLDRFALVANSLISSIATKRGRVRNRRIVYGNRV 744
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre6g00528 744 ProSiteProfiles SWIRM domain profile. 47 148 IPR007526 GO:0005515(InterPro)
Stre6g00528 744 Pfam Flavin containing amine oxidoreductase 165 589 IPR002937 GO:0016491(InterPro)
Stre6g00528 744 SUPERFAMILY Homeodomain-like 49 150 IPR009057 -
Stre6g00528 744 SUPERFAMILY FAD-NAD(P)-binding domain 154 592 IPR036188 -
Stre6g00528 744 Gene3D - 158 587 IPR036188 -
Stre6g00528 744 Gene3D - 240 545 - -
Stre6g00528 744 Gene3D - 52 151 IPR036388 -
Stre6g00528 744 PANTHER FLAVIN MONOAMINE OXIDASE 61 590 IPR050281 GO:0016491(PANTHER)
Stre6g00528 744 SUPERFAMILY FAD-linked reductases, C-terminal domain 426 538 - -
Stre6g00528 744 Pfam SWIRM domain 68 139 IPR007526 GO:0005515(InterPro)
Stre6g00528 744 FunFam Lysine-specific histone demethylase 1A 52 152 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre6g00528 K11450 [histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase [EC:1.14.99.66]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Stre Stre-Chr2:110135287 Stre6g00528 Stre-Chr6:14515684 dispersed
Stre Stre-Chr6:14515684 Stre8g02343 Stre-Chr8:83015887 dispersed
Stre Stre-Chr2:11036770 Stre6g00528 Stre-Chr6:14515684 transposed
Stre Stre-Chr2:151209299 Stre6g00528 Stre-Chr6:14515684 transposed
Stre Stre-Chr2:160341055 Stre6g00528 Stre-Chr6:14515684 transposed
Stre Stre-Chr6:14515684 Stre8g02335 Stre-Chr8:82631255 wgd
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Stre Amino_oxidase 5e-90 CL0063 TR SWI/SNF-SWI3